PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34201_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 464aa    MW: 52248.4 Da    PI: 5.8615
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34201_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.83.3e-140454601373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL++cA++v++g+le+a+  L+++s+laspdgd+mqR+aayfteALa+r+++ +++l kal++++ s  ++ +e+ ++kl
  Cotton_A_34201_BGI-A2_v1.0  45 LIRLLVACANHVAAGSLENANIGLEQISQLASPDGDTMQRIAAYFTEALANRMLKAWPGLHKALNSTKIS--SVPDEILVQKL 125
                                 5799************************************************************999998..6********** PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                 f+e++P+lk++++++NqaI+ea+ege++vHiiD++  +++QW++L+q++++Rpegpp+lRiTg+++    +ke le+++ rL+
  Cotton_A_34201_BGI-A2_v1.0 126 FFELCPFLKLAYIITNQAIVEAMEGEKMVHIIDLNSCEPAQWINLFQTFSARPEGPPHLRITGIHE----QKEVLEQMALRLT 204
                                 ******************************************************************....9************ PP

                        GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................... 214
                                 + Ae+l++pf+fn+ ++ +le+l+le+Lrvk+gEalaV++vlqlh+ll                                   
  Cotton_A_34201_BGI-A2_v1.0 205 EEAEKLDIPFQFNP-IVCKLENLDLESLRVKTGEALAVSSVLQLHSLLatddevprrnfnsppvsktrvlqmtqrtfgewlek 286
                                 **************.5788**************************************************************** PP

                        GRAS 215 ...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                                                 +s++ + +  ++L +++ lsPkv+vv+eqe++hn+++++er++eal++y+alfd+le++++r+  er
  Cotton_A_34201_BGI-A2_v1.0 287 epahiynpssdiassPSSLAPAPKMGSFLAALRALSPKVMVVTEQESNHNGPTLMERVIEALNFYAALFDCLESTVSRAPIER 369
                                 ************865333333336999******************************************************** PP

                        GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                                 +kvE++l+g+ei+n++aceg er+erhe+lekW  rle aGF+ vpls++ + qa +ll++ + dgy+++ee+g+lv++W++r
  Cotton_A_34201_BGI-A2_v1.0 370 QKVEKMLFGEEIKNIIACEGGERKERHEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQTNNYDGYKMKEENGCLVMCWQER 452
                                 *********************************************************************************** PP

                        GRAS 366 pLvsvSaW 373
                                 pL+s+SaW
  Cotton_A_34201_BGI-A2_v1.0 453 PLYSISAW 460
                                 ******** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.1519441IPR005202Transcription factor GRAS
PfamPF035141.1E-13745460IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MIPEGPSPVT SSPLQFFPWM SPSPGIGSPF PWLWELKPEE RGLWLIRLLV ACANHVAAGS  60
LENANIGLEQ ISQLASPDGD TMQRIAAYFT EALANRMLKA WPGLHKALNS TKISSVPDEI  120
LVQKLFFELC PFLKLAYIIT NQAIVEAMEG EKMVHIIDLN SCEPAQWINL FQTFSARPEG  180
PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV CKLENLDLES LRVKTGEALA  240
VSSVLQLHSL LATDDEVPRR NFNSPPVSKT RVLQMTQRTF GEWLEKEPAH IYNPSSDIAS  300
SPSSLAPAPK MGSFLAALRA LSPKVMVVTE QESNHNGPTL MERVIEALNF YAALFDCLES  360
TVSRAPIERQ KVEKMLFGEE IKNIIACEGG ERKERHEKLE KWILRLELAG FGRVPLSYHG  420
MLQAGRLLQT NNYDGYKMKE ENGCLVMCWQ ERPLYSISAW GFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-683746011378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614530.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1U8NLE60.0A0A1U8NLE6_GOSHI; scarecrow-like protein 3
STRINGGorai.012G080500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]