PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34171_BGI-A2_v1.0
Common NameF383_03101
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 403aa    MW: 46024.1 Da    PI: 4.8435
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34171_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.9e-35141052102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl k+ye+++d+++++++sws++ +sfvv+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++
  Cotton_A_34171_BGI-A2_v1.0  14 FLAKTYEMVDDPSTDSIVSWSASDKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFAND 87 
                                 9********************999****************************************9998.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F +g+ +ll++i+r+k 
  Cotton_A_34171_BGI-A2_v1.0  88 DFIRGQPHLLKNIHRRKP 105
                                 ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.35E-379103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-6510103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-3911103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.6E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDDAQGSSSS LPPFLAKTYE MVDDPSTDSI VSWSASDKSF VVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFI RGQPHLLKNI HRRKPVHSYS MQSHLGQGAS  120
SLTESERQNL RDEIERLKNE KELLALELKR HEQERQGFQL QMRLLRERLQ DMERRQQIMM  180
SSVARVLQKP GGAINLTPQL ETNDRKRRLT RIAYLYDEAG IEDSQTGNSL IARENVDSTS  240
LSNMEPFEQL ESSMVFWENA VHDFGQTNIQ HESNLELDES TSCVDTPAIS CIQLNIDARL  300
KSPGIDMNSE PAFVVVSEPI TAREQTAGTT APATTGVNDI FWEQFLTENP GSTDTQEVQS  360
ERKDSDASKN ESKPGDHGKF WWNTKNVNNL AEQMGHLTPA ERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-25910315120Heat shock factor protein 1
5d5u_B2e-25910324129Heat shock factor protein 1
5d5v_B2e-25910324129Heat shock factor protein 1
5d5v_D2e-25910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674150.0KR067415.1 Gossypium hirsutum HSF34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314179.10.0heat stress transcription factor A-4a-like
RefseqXP_016711464.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_016711465.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_017646832.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_017646833.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494031e-135HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0B0PJB50.0A0A0B0PJB5_GOSAR; Heat stress transcription factor A-4a-like protein
TrEMBLA0A0M3RMA80.0A0A0M3RMA8_GOSHI; HSF34
STRINGGorai.011G036400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-116heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]