PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34134_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 722aa    MW: 81078.8 Da    PI: 5.5221
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34134_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221441.4e-44772171133
                      DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaa 82 
                                 gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++  s+    +  +a
  Cotton_A_34134_BGI-A2_v1.0  77 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQSSpAAGTSA 159
                                 6899*****************************************************************95444443344444 PP

                      DUF822  83 gssas....aspesslq...sslkssalaspvesysaspksssfpspssldsislasa 133
                                 g  +s    +s++ +     ++ +ss  ++ ve  ++++k + +p ps +d  s+a a
  Cotton_A_34134_BGI-A2_v1.0 160 GMTSSssqmVSQQIPPPpatLQGVSSGYRTTVEYNACRMKGVFMPTPSPYDLSSTAPA 217
                                 4333301223333332221234569999**********************98877644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.2E-3879215IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.45E-181261699IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.5E-200264696IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.1E-104269689IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-68300314IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-68321339IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-68343364IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060347355IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008424.3E-8426435IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007504.5E-68436458IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-68509528IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-68543559IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-68560571IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.5E-68578601IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.3E-8581591IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007504.5E-68618640IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.3E-8669683IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.3E-8684698IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MATSMQKLVG VSEEDDEEEM EMDVKEEDDE DEENGEKQIA AQMMIGVDEV MPSTSSSDQF  60
QYQPQLQEQV SNQGGGGGAR RSRPLEEKER TKLRERHRRA ITARILAGLR RHGNYNLRVR  120
ADINDVIAAL AREAGWVVLP DGTTFPSRSQ SSPAAGTSAG MTSSSSQMVS QQIPPPPATL  180
QGVSSGYRTT VEYNACRMKG VFMPTPSPYD LSSTAPAQSS GVVADGGEQT ERLPLIAGSL  240
QVINDKQIIG LPTKLPERDF AGTPFVPVYV MLPLGVINMK CELADPDGLL KQLRVLKSIN  300
VDGVMVDCWW GIVEAHAPQE YNWNGYQRLF QMVRELKLKL QVVMSFHECG GNVGDDVCIP  360
LPHWVAEIGR SNPEIFFTDR EGRRNPECLS WGIDKERVLR GRTAVEVYFD YMRSFRVEFD  420
EFFEDGIISM VEVGLGPCGE LRYPSCPVKN GWRYPGIGEF QCHDQYMLKS LRKAAEMRGH  480
SFWARGPDNA GSYNSQPHET GFFCDGGDYD GYYGRFFLNW YSQVLLNHGD RVLSLAKLAF  540
DGTCITAKLP GIHWWYKTAS HAAELTAGYY NPCNRDGYTA IATMLQKHGA ALSFSCTEHH  600
ILEQQDHLRE ALADPRGLVW QVLNAAWDVC IPIASENAFL CHDRVGYNKI LDNVKPVNDP  660
DGRHFSSFTY HRLSPLLMER QNFMEFERFV KRMHGELLYT FSSGLLLFIS IPGLRWGVLS  720
QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdr_A1e-15126569911447Beta-amylase
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4422565e-56AM442256.2 Vitis vinifera contig VV78X202994.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633980.10.0PREDICTED: beta-amylase 7-like isoform X1
RefseqXP_017633981.10.0PREDICTED: beta-amylase 7-like isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0D2QYJ40.0A0A0D2QYJ4_GOSRA; Beta-amylase
STRINGGorai.004G158600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]