PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_33834_BGI-A2_v1.0

Common Name

F383_03694

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 326aa MW: 36406.4 Da PI: 7.1191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_33834_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.5	3.7e-16	55	104	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lr+l+P+ ++K + a+ L +++eY+++Lq Cotton_A_33834_BGI-A2_v1.0 55 RSKHSVTEQRRRSKINERFQRLRDLIPNT----DQKRDTASFLLEVIEYVQYLQ 104 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.2E-24	51	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-19	51	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.444	53	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-13	55	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.33E-14	55	108	No hit	No description
SMART	SM00353	3.2E-12	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MRTGKGSQEE EEYDEEEFGS KKGGFSSNQN MSFNPNNNST TNKDGKNNDK ANAIRSKHSV 60 TEQRRRSKIN ERFQRLRDLI PNTDQKRDTA SFLLEVIEYV QYLQKKVQKY EDSYQGWSSE 120 PAKLMPWRNS HWHVQSLVGH PQAIKKGSGP GATFARKLDE NNTNINPTVI TSLPNAVETD 180 PIRYVTSKTM DCQTELANSG THLPIQGENV LVHPLQRPVS ETQSTECLVG NDIPINQQED 240 LTIEGGTISI SSVYSQGLLS ALAQALQCLG LDLSQANMLV QIDLGKHANR GLSSKEPHNS 300 PHQAMTHLRD VSSGEDSDHA QKRLKK

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017616870.1	0.0	PREDICTED: transcription factor BIM2-like
Swissprot	Q9CAA4	1e-109	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0B0PND5	0.0	A0A0B0PND5_GOSAR; Transcription factor BIM2-like protein
STRING	Gorai.013G098000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-83	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]