PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33827_BGI-A2_v1.0
Common NameF383_23511
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 555aa    MW: 59105.3 Da    PI: 5.9
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33827_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.3e-09372420355
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cotton_A_33827_BGI-A2_v1.0 372 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 420
                                 58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17367437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.69E-11367424No hitNo description
PROSITE profilePS5088815.478369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-17370437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-6372420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDVGEKDKYE LEKRNDNSLN YQTSGMSSAW QFGGSNLTST PMSLVSSDNP LVIGSSSASA  60
SMGDSFCSNL WEHPSNSQNL GFCEINVQNG ASSSNAMGIG RGGPASVRSS IDRPFEMGWN  120
AASSMLKGGI FLPNASGVLP SSLSQLQTDS AFIERAAKFS SFNGGNFSDI VNPFGIPEAM  180
GVYARGVGLM QGPQDVYTIS GVKSISGVES QRSKLMTTEA SRDLQAENRA TQESPLKNER  240
NSGSLVRSNE EAKQGNGGSG NESNEAESSG GAGGHDEPSA LDGTAGESSA KVLSSKKRKR  300
IVQEAEVDQA KGSQSPVEAA KDGAENQQKG DQNQTTMVNK TTAKHGKQGS QASDPPKEEY  360
IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ  420
RQVEFLSMKL ATVNPRVDCN IEGLLAKDII QSRAGPSTLG FSPDLSVGYP PLHPSQPGLG  480
PGGFPVMGNN ADIIRRTLSS HFTPMTGGFK EPNQLSNAWE DELHNVVQMN YGTSTASDSQ  540
EVNGSQPSGH TKVEL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468119e-91EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619628.10.0PREDICTED: transcription factor bHLH49-like isoform X2
TrEMBLA0A0B0NYU70.0A0A0B0NYU7_GOSAR; Transcription factor bHLH49-like protein
STRINGGorai.013G098600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-124bHLH family protein