PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 359aa MW: 39654.9 Da PI: 6.372

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_33782_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.4	1.2e-20	171	220	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Cotton_A_33782_BGI-A2_v1.0 171 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 220 59****9.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.16E-34	170	230	No hit	No description
SuperFamily	SSF54171	3.66E-23	171	229	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.143	171	228	IPR001471	AP2/ERF domain
SMART	SM00380	7.0E-38	171	234	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	3.4E-32	171	229	IPR001471	AP2/ERF domain
Pfam	PF00847	3.6E-14	172	220	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	172	183	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-11	194	210	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAATTDFYSS SSDIYGGELM EALEPFMKSA SSSSSSSSSS SSSSSSSYSP SPSSYSPSPS 60 PSPSPSTSYL SLSSSQTQPN FYADGCYFPA VDQYPGVQQP QIGSTIGLNN LTQAQINQIQ 120 AQFLFQNNQP SYLYQNPQLN ANPNTNHMLS FLSPKPVPMK QMGSPPKPTK LYRGVRQRHW 180 GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDKAAYKLRG DFARLNFPNL RHQGSHIGGE 240 FGEYKPLHSS VDAKLQAICE SLELNQKQAN NKKTKKLSKE NKVQLAEPEE KTVKVENSPS 300 SLSPVLSENE GSTESSPLSD LTFSDFNEQP WPEVITSSES FMLSKYPSYE IDWDSILKA

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAATTDFYSS SSDIYGGELM EALEPFMKSA SSSSSSSSSS SSSSSSSYSP SPSSYSPSPS  60
PSPSPSTSYL SLSSSQTQPN FYADGCYFPA VDQYPGVQQP QIGSTIGLNN LTQAQINQIQ  120
AQFLFQNNQP SYLYQNPQLN ANPNTNHMLS FLSPKPVPMK QMGSPPKPTK LYRGVRQRHW  180
GKWVAEIRLP KNRTRLWLGT FDTAEEAALA YDKAAYKLRG DFARLNFPNL RHQGSHIGGE  240
FGEYKPLHSS VDAKLQAICE SLELNQKQAN NKKTKKLSKE NKVQLAEPEE KTVKVENSPS  300
SLSPVLSENE GSTESSPLSD LTFSDFNEQP WPEVITSSES FMLSKYPSYE IDWDSILKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-22	170	228	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017646159.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-4-like
Swissprot	Q8H1E4	1e-102	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A1U8PT60	0.0	A0A1U8PT60_GOSHI; ethylene-responsive transcription factor RAP2-13-like
STRING	Gorai.010G043200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2716	26	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78080.1	6e-78	related to AP2 4

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]