PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33618_BGI-A2_v1.0
Common NameF383_27258
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27798.6 Da    PI: 8.6788
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33618_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Cotton_A_33618_BGI-A2_v1.0  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                                79***********************************************96 PP
2K-box93.43.9e-31841759100
                       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                 + ea + s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL++slk iRs++++++l+q+ +lq+ke+ l+e+n
  Cotton_A_33618_BGI-A2_v1.0  84 TREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDSSLKLIRSTRTQYMLDQLTDLQRKEHLLNEAN 166
                                 556666789************************************************************************** PP

                       K-box  92 kaLrkklee 100
                                 k+L+++l+e
  Cotton_A_33618_BGI-A2_v1.0 167 KSLKQRLME 175
                                 *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-34281IPR002100Transcription factor, MADS-box
CDDcd002654.72E-46276No hitNo description
PRINTSPR004048.6E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.04389179IPR002487Transcription factor, K-box
PfamPF014863.0E-2591173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMMKTLERY QKCSHGAPET NVSTREALEL SSQQEYLKLK ARYEALQRSQ RNLLGEDLGP  120
LSSKELESLE RQLDSSLKLI RSTRTQYMLD QLTDLQRKEH LLNEANKSLK QRLMEGYQVH  180
SLQLNPNADD VGYGRQPTHQ PQGDVFFHPL DCEPTLQIGY QPDTISAVTG CPSVNNYMTG  240
WLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-45751761104Developmental protein SEPALLATA 3
4ox0_B2e-45751761104Developmental protein SEPALLATA 3
4ox0_C2e-45751761104Developmental protein SEPALLATA 3
4ox0_D2e-45751761104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364320.0HM236432.1 Gossypium hirsutum MADS16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313655.10.0agamous-like MADS-box protein AGL9 homolog
RefseqXP_017646984.10.0PREDICTED: agamous-like MADS-box protein AGL9 homolog
SwissprotQ8LLR01e-158MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLA0A0B0PFJ81e-180A0A0B0PFJ8_GOSAR; Agamous-like MADS-box protein AGL9
TrEMBLA0A2P5XXV21e-180A0A2P5XXV2_GOSBA; Uncharacterized protein
TrEMBLV9I2A31e-180V9I2A3_GOSHI; MADS16
STRINGGorai.005G165000.11e-176(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62202644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-128MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]