PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33477_BGI-A2_v1.0
Common NameF383_25955
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 298aa    MW: 33939.5 Da    PI: 6.6692
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33477_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.81.2e-50101341128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lp+GfrF Ptdeelv++yL++k++++++ +  +i+e+d+yk++PwdLp  +  +ekewyfFs+rd+ky++g r+nra+ sgyW
  Cotton_A_33477_BGI-A2_v1.0  10 LPAGFRFYPTDEELVMHYLCRKCASQSIAV-PFIAELDLYKYDPWDLPDLALYGEKEWYFFSPRDRKYPNGLRPNRAAGSGYW 91 
                                 799************************999.88***************65556799*************************** PP

                         NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg dk++ +   + vg+kk Lvfy g+apkgekt+W+mheyrl
  Cotton_A_33477_BGI-A2_v1.0  92 KATGADKPIGQ--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 134
                                 *********98..789***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-617160IPR003441NAC domain
PROSITE profilePS5100559.00910160IPR003441NAC domain
PfamPF023651.1E-2611134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MTATELQLHL PAGFRFYPTD EELVMHYLCR KCASQSIAVP FIAELDLYKY DPWDLPDLAL  60
YGEKEWYFFS PRDRKYPNGL RPNRAAGSGY WKATGADKPI GQPKPVGIKK ALVFYAGKAP  120
KGEKTNWIMH EYRLADVDRS VRKKNSLRLD DWVLCRIYNK KGCIEKQPTR GSVTKKASVT  180
EIEESKPDIG TLGVETCEFP PAATAIGNDY VYFDSSESVP RVHTDSSCSE HAVSREFMTE  240
VQSVPKWKEE LGMANNNALE FAYNYLDANM DIGFASQMQS SNQLSPYQDI FMYLQKPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-7841669174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106440.0KC110644.1 Gossypium hirsutum NAC protein 9 (NAC9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609013.10.0PREDICTED: NAC domain-containing protein 2-like isoform X1
RefseqXP_017620855.10.0PREDICTED: NAC domain-containing protein 2-like isoform X1
SwissprotQ390131e-144NAC2_ARATH; NAC domain-containing protein 2
TrEMBLA0A0B0NZN40.0A0A0B0NZN4_GOSAR; NAC domain-containing 2-like protein
STRINGGorai.005G088800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-146NAC family protein
Publications ? help Back to Top
  1. Florentin A,Damri M,Grafi G
    Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization.
    Dev. Dyn., 2013. 242(10): p. 1121-33
    [PMID:23798027]
  2. Jensen MK, et al.
    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.
    FEBS Open Bio, 2013. 3: p. 321-7
    [PMID:23951554]
  3. Wang YX
    Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
    Mol. Biol. Rep., 2013. 40(11): p. 6451-8
    [PMID:24057250]
  4. Yang X, et al.
    Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis.
    Plant Cell Rep., 2015. 34(6): p. 943-58
    [PMID:25666276]
  5. Du Q,Wang H
    The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
    Plant Signal Behav, 2015. 10(10): p. e1078955
    [PMID:26340415]
  6. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  7. Liu Y,Sun J,Wu Y
    Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice.
    J. Plant Res., 2016. 129(5): p. 955-962
    [PMID:27216423]
  8. Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
    Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.
    PLoS ONE, 2016. 11(9): p. e0162327
    [PMID:27618630]
  9. Zhao J,Missihoun TD,Bartels D
    The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana.
    Planta, 2018. 248(4): p. 1017-1027
    [PMID:30027414]