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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_32941_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
Nin-like |
Protein Properties |
Length: 239aa MW: 27837.7 Da PI: 6.315 |
Description |
Nin-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_32941_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | RWP-RK | 82.9 | 3.1e-26 | 129 | 179 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
+++++l++++kyF+ pi +AAke++v+lT+LK++CR+++I+RWPhRkiksl
Cotton_A_32941_BGI-A2_v1.0 129 TASLELDEIQKYFDFPISKAAKEMNVGLTLLKKRCRELNIMRWPHRKIKSL 179
6899*********************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MDLGFAKMEN GSEFDYCFNF EENPFGKVEF EVDSFYDFNS PALLPHPQAD NLCIQFMDFE 60 EISSDFALFD QNEDIMADAI KRVVDSFDHH CGNITNSGGS STEASRVIHE IEYGDSHGEK 120 IRSFRRKRTA SLELDEIQKY FDFPISKAAK EMNVGLTLLK KRCRELNIMR WPHRKIKSLK 180 SLIHNVKELG LTNEIVMLEE HQRMLEKVPD LELTDRTKKL RQACFKANYK KRRSLASCY
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX577654 | 3e-36 | JX577654.1 Gossypium hirsutum clone NBRI_GE9518 microsatellite sequence. |