PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32741_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 345aa    MW: 37662.8 Da    PI: 4.5837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32741_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17123169353
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                                   GVr++k +g+W+AeIr+p e   ++r++lg+f+t e+Aa+a++a ++++
  Cotton_A_32741_BGI-A2_v1.0 123 PVGVRRRK-WGKWAAEIRHPLE---KTRIWLGTFDTLEDAAEAYDAKKLEF 169
                                 68***998.**********965...5********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.703122179IPR001471AP2/ERF domain
PfamPF008478.6E-11122169IPR001471AP2/ERF domain
SMARTSM003807.6E-14122184IPR001471AP2/ERF domain
PRINTSPR003672.0E-7123134IPR001471AP2/ERF domain
CDDcd000182.24E-21124169No hitNo description
SuperFamilySSF541715.95E-16124169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-20125169IPR001471AP2/ERF domain
PRINTSPR003672.0E-7145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MPEPRKEASN KNKLYKKSKK TQPILSEDTQ MTRKVRVIFH DPYATDSSSS EDESERTITR  60
KAPRGKLVVR EVGVPILGLV SHSKPLEFEA SSQDSNCKTP TRRKRVLDTT LDDNALVVEA  120
KRPVGVRRRK WGKWAAEIRH PLEKTRIWLG TFDTLEDAAE AYDAKKLEFG ALAVAAAAAA  180
AAAATASSDK TYDISCSAST SHTSNSVASV SEESVSPSSH TTPSSVLELD TSASVAFFNS  240
NHDSGDANKE GFDANFANLV IPDLCFIDDP LLSGSVGQEL NLDEEQSDYL FVNDSGVILE  300
DYCSIEDLSI CGIEGDEPSE LPDCDFSTDD FDFCKKVAHL NILCP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129RPVGVRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276451e-130HQ527645.1 Gossypium herbaceum clone NBRI_B_EYI1BW404I0CI4 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616655.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_017616656.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_017616657.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
RefseqXP_017616658.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLA0A1U8I9Q10.0A0A1U8I9Q1_GOSHI; ethylene-responsive transcription factor ERF119-like
STRINGGorai.013G076100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-30ERF family protein