PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32665_BGI-A2_v1.0
Common NameF383_02875
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 531aa    MW: 59655.7 Da    PI: 6.3055
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32665_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.23.1e-1411615311374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l+++L++cA+avs++dl  aq+l+ +l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++
  Cotton_A_32665_BGI-A2_v1.0 161 LKQVLVSCAKAVSDNDLLTAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHI 240
                                 5799*****************************************************************9...9********* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 ++ev+P++kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +++r
  Cotton_A_32665_BGI-A2_v1.0 241 LYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVAKR 323
                                 ******************************************************************998899999******** PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 L+k+A+ ++vpfefn+ +a +  +++ e+L+v+pgEalaVn++++lh+++desvs+e++rd++L+lvkslsPkvv++veqe++
  Cotton_A_32665_BGI-A2_v1.0 324 LSKLAALFKVPFEFNA-AAMSGCEVQQEHLQVQPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESN 405
                                 ****************.899999************************************************************ PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 +n+++F+ rf e+l+yy+a+f+s++++lpre++eri+vE+++l+r++vn++aceg er+erhe ++kWr+r+++aGF+p+pls
  Cotton_A_32665_BGI-A2_v1.0 406 TNTAPFFPRFRETLNYYTAMFESIDVTLPREHKERINVEQHCLARDVVNIIACEGPERVERHELMGKWRSRFRMAGFTPYPLS 488
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 + +++++k+ll+++ ++ yr+ee++g l+lgW++r Lv+ +aWr
  Cotton_A_32665_BGI-A2_v1.0 489 SLVNATIKTLLENYCDR-YRLEERDGGLYLGWMNRDLVASCAWR 531
                                 ***************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.905135512IPR005202Transcription factor GRAS
PfamPF035141.1E-138161531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MQASQQHRSS VMASRLFPRV KEEVEPCSFP QFPAIDRSFC YTDSSHGSHF SVKNSHEPYC  60
TLESSFACGS YRVYNSSSNG SPMSQQESQS NMSDLHHSPD NTYSSPISGS CITDDVSDLK  120
GKLRELETVM LGPDCDIINS TISPEMDSWR LVMDAVSRRD LKQVLVSCAK AVSDNDLLTA  180
QWLMDELRQM VSVSGEPIQR LGAYMLEGLV ARLASSGSSI YKALRCKEPA SAELLSYMHI  240
LYEVCPYFKF GYMSANGAIA EAMKDEDRVH IIDFQIGQGS QWITLIQAFA ARPGGPPHIR  300
ITGIDDSTSA YARGGGLNIV AKRLSKLAAL FKVPFEFNAA AMSGCEVQQE HLQVQPGEAL  360
AVNFAFMLHH MPDESVSTEN HRDRLLRLVK SLSPKVVTLV EQESNTNTAP FFPRFRETLN  420
YYTAMFESID VTLPREHKER INVEQHCLAR DVVNIIACEG PERVERHELM GKWRSRFRMA  480
GFTPYPLSSL VNATIKTLLE NYCDRYRLEE RDGGLYLGWM NRDLVASCAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-631635316375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606288.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_017606296.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0B0PJ950.0A0A0B0PJ95_GOSAR; Scarecrow-like transcription factor PAT1
STRINGGorai.001G192800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]