PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32570_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 410aa    MW: 45444.4 Da    PI: 5.1155
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32570_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12230275454
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Cotton_A_32570_BGI-A2_v1.0 230 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYISEL 275
                                 799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.1E-3417116IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.92226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-17227288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-14229280No hitNo description
Gene3DG3DSA:4.10.280.108.6E-17230288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10230275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MKGAQTLIGD NHEVDVSMMD GTTGVSDAEW FYVMSLSRSF PAGEGIPGMA LSTGSLVWLT  60
GAHALQFYNC ERAIEAQMHG IETMVCIPTS CGVLELGSVE MISENWGLVQ QVKSIFGADP  120
IDLLQKQSST DPTLTRPSIP FLDRNISFAD MGIVSGVEEE EENVGPVNET KQEHHNHPTK  180
KYSTKLGQSS SVDSEHSDTD RPSLAMSHLE QRTPQKRGRK PGLGRETPLN HVEAERQRRE  240
KLNHRFYALR AVVPNVSRMD KASLLSDAVS YISELKAKVE ELESQLQREC KKPKVEMVDV  300
TDNQSTTTSV EKEAAKPDNS PSPATAGCVG LEFDIKIMGN DAMIRVQSEN MNYPVTRLMV  360
ALRDLEFPIH HASMSCVNET MLQDIVVNVP DLELRNEQGL KSALLRRLDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-28223297178Transcription factor MYC2
5gnj_B5e-28223297178Transcription factor MYC2
5gnj_E5e-28223297178Transcription factor MYC2
5gnj_F5e-28223297178Transcription factor MYC2
5gnj_G5e-28223297178Transcription factor MYC2
5gnj_I5e-28223297178Transcription factor MYC2
5gnj_M5e-28223297178Transcription factor MYC2
5gnj_N5e-28223297178Transcription factor MYC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158010.0JX615801.1 Gossypium hirsutum clone NBRI_GE60007 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637860.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U8P8U80.0A0A1U8P8U8_GOSHI; transcription factor MYC2-like
STRINGGorai.001G151700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-60bHLH family protein