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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32565_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 858aa MW: 96704.5 Da PI: 7.1323 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.3 | 6.8e-15 | 66 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fY+ YA+++GFs+ + + +++k +g i++ +f Cs+e ++++ ++ C+a++++++++ +kw+ tk++++ Cotton_A_32565_BGI-A2_v1.0 66 FYDGYARRLGFSTHVGQFTRTKLDGPIVTWDFACSREVLKRKNVES--------------CNAMFRIERKDGKKWVATKFVED 134 9**************************************9998877..............*********************** PP FAR1 85 HnHela 90 HnH+++ Cotton_A_32565_BGI-A2_v1.0 135 HNHSMV 140 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-12 | 66 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-31 | 271 | 363 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.214 | 548 | 584 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.4E-12 | 548 | 582 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.6E-8 | 559 | 586 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MDVGGGKGDN VRGVNIESSK GGGSNWNLIE NSTGIDVVVN PNDDGGAGGK PCVGMEFESE 60 DAGRTFYDGY ARRLGFSTHV GQFTRTKLDG PIVTWDFACS REVLKRKNVE SCNAMFRIER 120 KDGKKWVATK FVEDHNHSMV NPSKVHYLRS RRHFAGATKN VPETSDAATD VCALVDGNHV 180 SCEATRIGNT SCVDPNHLVR NMGSVGYVGL PSQRRTLGKD AQNLLNYFKK MQAENPGFYY 240 AIQLDDDNRM TNVFWADARS RAAYNHFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQMVL 300 FGCALLLDES ESSFTWLFRT WLSAMNNRSP ISITTDQDRA IQAAVSQVFP ETRHCICKWH 360 ILREGQERLA HIYLAHPSFY GEIYGCINFS ETIEDFESSW TTLLDKYNLQ KNEWLLAVYN 420 ARKQWAPVYF RGTFFASLSS NQGVCSFFDG YINQQTTIPR FLKQYERALE RSLEREIEAD 480 CDTICTTPVL KTPSPVEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIVSKYRVAK 540 YEHDDKAYFV MLNVSEMKAS CTCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILRRWTKS 600 AKSWVGLDDK NADPQGVETL TARFNILCQE AFKLAEEGSV VPETYSAAIN ALRDAVKKVA 660 FIKKDVAKVT PPRSYINGNS HEDGSKKTTS PVSEMVPSLW PWQDAVSPRF NLIDSGAPLT 720 DLNQPSMVPV SIDRDTDHVD STVVLSCFKS MTWAIENKNE VEACKVAVIN LKLHDYSKNP 780 LGETEVQFRL TKVTLEPMLR SMAYISQQLS TPVNRVAAIN LKLQDTKTTS GEKEVKFQVS 840 KDTLGSMLRS MAYIREQL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243076 | 0.0 | AC243076.1 Gossypium arboreum clone GAH047E15-jmp, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017603932.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_017603945.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Refseq | XP_017603954.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 3-like | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A1U8IF82 | 0.0 | A0A1U8IF82_GOSHI; protein FAR1-RELATED SEQUENCE 3-like | ||||
STRING | Gorai.011G224000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
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