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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32505_BGI-A2_v1.0 | ||||||||
Common Name | F383_09261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 529aa MW: 57675.4 Da PI: 7.1319 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 41.8 | 2.1e-13 | 41 | 80 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCf++g +C+ C+C +C+N+ e+ Cotton_A_32505_BGI-A2_v1.0 41 KQKQCNCKNSRCLKLYCECFSSGFYCNG-CNCLNCHNNVEN 80 89**************************.********9875 PP | |||||||
2 | TCR | 50.4 | 4.4e-16 | 125 | 164 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks+ClkkYCeCf+a+ Cse+CkC dCkN e Cotton_A_32505_BGI-A2_v1.0 125 KHNKGCHCKKSSCLKKYCECFQANILCSENCKCMDCKNFE 164 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.0E-14 | 40 | 80 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.442 | 41 | 165 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.4E-10 | 42 | 77 | IPR005172 | CRC domain |
SMART | SM01114 | 3.3E-19 | 125 | 166 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.8E-12 | 128 | 163 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MQRVPHPVQE LPPQTYQLSK QESPRSRPRV HADAKDGTPK KQKQCNCKNS RCLKLYCECF 60 SSGFYCNGCN CLNCHNNVEN EAARQEAVGT TLERNPNAFR PKIASSPHRP QDTRDDAHDV 120 QMVGKHNKGC HCKKSSCLKK YCECFQANIL CSENCKCMDC KNFEGSEERR ALVHGDHNSM 180 AYMQQANAAI SGAVGSSGFG IPATSKKRKS EEIIFGLAVK DQSVHKIVQQ QQQENHIRDL 240 LATCSPLSAH LSGTANKASL GSSKFSYRSP LANILQPQYV KELCSVLVLV SSEAGRALAA 300 EKSGKKDQQA KGDSIETTVS SNQMHEMSEN GNGVLSSATD DCESENHGDA NRSGDCGANE 360 DSVQNGMPLS PRTRALMCDE EDTMFMAVGS PDLLTDPSQN ITQKSLNGHE CTEVYAEQES 420 LVLTVFRDFL NQLITRGSIK ETRCFPSPLS EKRSEQEPAE NGAIKSGNRA VGQKQPYPNG 480 TVKSLNPAPA EISQTLSAAT SVLNTDLPLK HESSIGKEDT KNVGIEGSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-29 | 42 | 174 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 1e-29 | 42 | 174 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX622521 | 2e-76 | JX622521.1 Gossypium hirsutum clone NBRI_GE69283 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643333.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1 | ||||
Refseq | XP_017643334.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X2 | ||||
Swissprot | Q9SZD1 | 1e-143 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A0B0PI04 | 0.0 | A0A0B0PI04_GOSAR; Protein lin-54 | ||||
STRING | Gorai.010G108300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-133 | Tesmin/TSO1-like CXC domain-containing protein |