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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_32408_BGI-A2_v1.0 |
| Common Name | F383_16691 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
SRS |
| Protein Properties |
Length: 306aa MW: 33903.6 Da PI: 6.501 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_32408_BGI-A2_v1.0 | genome | BGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 232.8 | 5.7e-72 | 90 | 240 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs 84
++g+++CqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++ + ++ kr +++ +
Cotton_A_32408_BGI-A2_v1.0 90 KHGGMNCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQHHQQHEDQFRGENPKRLRENQGSP 172
6899******************************************************9999988855555555555568888 PP
DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+l++t+ls ++s le ++P+evss+avfrcv+vs++dd++ee+aYqtav+i+GhvfkGiLydqG+e+
Cotton_A_32408_BGI-A2_v1.0 173 SLACTRLSPTTSG--LELGQFPPEVSSPAVFRCVKVSAMDDEDEEFAYQTAVNIAGHVFKGILYDQGPES 240
9999999988765..88899************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MAGLFYLGGR EADTGNKQEE DKEESLYLYR NEEIYNKGFE IWPQYYYQQQ QQQQENVNTI 60
SFGAGPSRIA TGFNLSDEPS SRSVGFTVMK HGGMNCQDCG NQAKKDCAHM RCRTCCKSRG 120
FQCQTHVKST WVPAAKRRER QQQLAALQHH QQHEDQFRGE NPKRLRENQG SPSLACTRLS 180
PTTSGLELGQ FPPEVSSPAV FRCVKVSAMD DEDEEFAYQT AVNIAGHVFK GILYDQGPES 240
HYTGGGESSQ QLNLITAAVT TAETARTTTT AATSSNAGTS MLDPCLYPAP LNAFIAGTQF 300
FPPPRS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX616287 | 1e-176 | JX616287.1 Gossypium hirsutum clone NBRI_GE60826 microsatellite sequence. |
