PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32341_BGI-A2_v1.0
Common NameF383_20790
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 820aa    MW: 89048.2 Da    PI: 6.3725
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32341_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.6e-21119174156
                                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Cotton_A_32341_BGI-A2_v1.0 119 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 174
                                 688999***********************************************999 PP
2START216.31e-673265501206
                                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 
                                 ela++a++elvk+a+ +ep+W +s     e++n+de+l++f++  +     + +ea+r+sg+v+ ++  lve+l+d++ +W+e
  Cotton_A_32341_BGI-A2_v1.0 326 ELALAAMNELVKMAQTDEPLWIRSLeggrEILNQDEYLRTFTPCIGmksngFVTEASRESGMVIINSLALVETLMDSN-RWSE 407
                                 5899**************************************9888999999**************************.**** PP

                                 T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS
                       START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146
                                 +++    + +t++vis g      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++ +  +s+v ++
  Cotton_A_32341_BGI-A2_v1.0 408 MFPcmiaRTSTTDVISGGvggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRETSGAPSFVNCR 490
                                 ************************************************************************999******** PP

                                 ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                 +lpSg+++++++ng+skvtwveh++++++++h+l+++l++sg+a+ga++wvatlqrqce+
  Cotton_A_32341_BGI-A2_v1.0 491 RLPSGCVVQDMPNGYSKVTWVEHAEYEESQVHQLYHPLLRSGMAFGAQRWVATLQRQCEC 550
                                 **********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-20102176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-21106176IPR009057Homeodomain-like
PROSITE profilePS5007117.216116176IPR001356Homeobox domain
SMARTSM003899.9E-18117180IPR001356Homeobox domain
CDDcd000861.32E-18118176No hitNo description
PfamPF000461.4E-18119174IPR001356Homeobox domain
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PROSITE profilePS5084845.26317553IPR002913START domain
SuperFamilySSF559613.72E-35319550No hitNo description
CDDcd088756.21E-128321549No hitNo description
PfamPF018521.8E-59326550IPR002913START domain
SMARTSM002348.6E-55326550IPR002913START domain
SuperFamilySSF559616.28E-24578813No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MSFGGFLDNN TGGGFGGARM VADIPYSNNM ATGATAIAQP RLMSPSLPKN IFNSPGLSLA  60
LQPNIDNQGD HGSRIMRESL EGSVGRRSRE EEHESRSGSD NMDGASGDDQ DAADKPPRKK  120
RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSKRLCLETR QVKFWFQNRR TQMKTQLERH  180
ENSLLRQEND KLRAENMSIR DAMRNPICTN CGGPAIIGDI SLEEQHLRIE NARLKDELDR  240
VCALAGKFLG RPISTLATSI APPLPNSSLE LGVGSNGFGA LSTVATTLPL GPDFGGGMSN  300
ALVPPSRPTT AVTGLDRSVE RSMFLELALA AMNELVKMAQ TDEPLWIRSL EGGREILNQD  360
EYLRTFTPCI GMKSNGFVTE ASRESGMVII NSLALVETLM DSNRWSEMFP CMIARTSTTD  420
VISGGVGGTR NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGVWAVV DVSVDTIRET  480
SGAPSFVNCR RLPSGCVVQD MPNGYSKVTW VEHAEYEESQ VHQLYHPLLR SGMAFGAQRW  540
VATLQRQCEC LAILMSSSVP TRDHTGITAS GRRSMLKLAQ RMTDNFCAGV CASTVHKWNK  600
LNVGNVDEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVS PQRLFDFLRD ERLRSEWDIL  660
SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NANQSSMLIL QETCIDAAGS LVVYAPVDIP  720
AMHVVMNGGD SAYVALLPSG FAIVPDGPGS RGPISNGQVN GNGSGGGGAE RVGGSLLTVA  780
FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALQCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631289.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0B0NTZ30.0A0A0B0NTZ3_GOSAR; Homeobox-leucine zipper ANTHOCYANINLESS 2-like protein
STRINGGorai.007G096000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]