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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32288_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 31277.8 Da PI: 9.3329 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.5 | 3.3e-39 | 36 | 95 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + ++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rkn++s Cotton_A_32288_BGI-A2_v1.0 36 PPEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNRRS 95 57899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 35 | 94 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.0E-33 | 39 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDAAKWSQDF GLVKPMEEML PNTCTRGPML DRKTRPPEQL NCPRCNSTNT KFCYYNNYSL 60 TQPRYFCKTC RRYWTEGGSL RNVPVGGGSR KNRRSILSSS SSPSSSSSSS SASAKVPADL 120 KPTSFSHLSS QNPNTHKGQQ DLNLGFPPMQ PSHGLSQYIQ VAKVENNDHQ QKYPSASALG 180 LLRTGMASRG LNSFVPAPEP DSTTPYSTGF SMQDYKPALT FSIDGLENRA AGIHSIQENG 240 GRVFFPFGEM KPISTNITNE VDQNKDQGNS AGYWTNGMFG GGGGSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ524553 | 0.0 | HQ524553.1 Gossypium herbaceum clone NBRI_L004 simple sequence repeat marker, genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643286.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.5-like | ||||
Swissprot | Q9ZPY0 | 2e-62 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | A0A1U8NXI5 | 0.0 | A0A1U8NXI5_GOSHI; dof zinc finger protein DOF2.5-like | ||||
STRING | Gorai.001G153300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2528 | 26 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 2e-67 | Dof family protein |
Publications ? help Back to Top | |||
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