PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32050_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 672aa    MW: 77626.5 Da    PI: 6.5069
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32050_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.61.8e-2265147290
                        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++el+
  Cotton_A_32050_BGI-A2_v1.0  65 FYNCYAKEQGFGVRVSNTWYR-KTKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENKRWRIIEVELD 141
                                 9****************9998.67779**************99888.....******************************** PP

                        FAR1  85 HnHela 90 
                                 HnH ++
  Cotton_A_32050_BGI-A2_v1.0 142 HNHLIS 147
                                 ***876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1965147IPR004330FAR1 DNA binding domain
PfamPF105516.3E-26268361IPR018289MULE transposase domain
PROSITE profilePS509669.099555591IPR007527Zinc finger, SWIM-type
SMARTSM005756.6E-5566593IPR006564Zinc finger, PMZ-type
PfamPF044341.5E-4568588IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MMDGVSLNTD PVVDDDADAD ADEFEIEGDC GMAECISQSG VIQGENPLPP VVGMEFDSYE  60
DVYYFYNCYA KEQGFGVRVS NTWYRKTKER YRGKLSCSSA GFKKKSEANR PRPETRTGCP  120
AMIKFRLMEN KRWRIIEVEL DHNHLISPVS GKIYKSHKQL GIGTKRALQL DSAEEVQKVR  180
LFRTIVIDVE GNGSVEVSSG EFRSSHNQTS QLRLKDGDAQ AIHNYFSHLQ LIDPNFFYVV  240
DLNEKGCLRN LFWSNTRSRV AYGYFGDVVA VDTTCLTDKY QVPLVSFIGV NHHGQSVLLG  300
CGLLAGDTIE ACTWLFRAWL TCMLGRPPQV IITDQCRTLQ AAVTDVFPRA FHCLCLPRIM  360
QKVPEKLGGL YEYESIRMAL NNAVYYSLRP EEFEATWEDM IHHYGLGNHV WLQMLYEDRR  420
QWVPVYLKEI FLAGLLPTRP NEVVESFFDG YLNKHTSLKE FLDKYDQALQ ANHQVEVLAD  480
MESRNSGFML QSRCYFELQL AKLYTNNILR KFEREVEGMY SCFCTRKING EGEVITYMVR  540
EQIEVDGNRR ESRDFEVLYN ATEMEVLCVC GLFNFKGYLC RHALRVLHQN GIEEIPHQYV  600
VSRWRKDIKR SYVLNHSNGG IDINNPVHRY DHLYKCIMQV VEEARKSEVR YKDTVQALDQ  660
ILRKLNLVEG RL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017650068.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBLA0A0D2TPE00.0A0A0D2TPE0_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JFB10.0A0A1U8JFB1_GOSHI; protein FAR1-RELATED SEQUENCE 6-like isoform X1
STRINGGorai.009G127000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6