PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32041_BGI-A2_v1.0
Common NameF383_02158
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 369aa    MW: 42316.4 Da    PI: 8.8337
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32041_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-065071223
                                EETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                +C+ Cg +F+ + +Lk+H+++H
  Cotton_A_32041_BGI-A2_v1.0 50 ECQECGATFRKPAHLKQHLQSH 71
                                5*******************99 PP
2zf-C2H2163.4e-0598122123
                                 EEET..TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                 ++C   dC+ s++rk++L+rH+  H
  Cotton_A_32041_BGI-A2_v1.0  98 FVCLvdDCHASYRRKDHLNRHLLQH 122
                                 899999***************9887 PP
3zf-C2H212.50.00044127152123
                                 EEET..TTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                 ++Cp  +C+  F  + n+krH +  H
  Cotton_A_32041_BGI-A2_v1.0 127 FSCPieNCNSKFAFQGNMKRHVKEfH 152
                                 89********************9988 PP
4zf-C2H2193.8e-06167191123
                                 EEET..TTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                 y+C+   Cgk+F+  s L++H  +H
  Cotton_A_32041_BGI-A2_v1.0 167 YVCQevGCGKVFKFASKLRKHEDSH 191
                                 99*******************9888 PP
5zf-C2H215.64.5e-05258282223
                                 EET..TTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                 kC    C  +Fs+ksnL++H +  H
  Cotton_A_32041_BGI-A2_v1.0 258 KCDfgGCLHTFSTKSNLRQHVKAvH 282
                                 688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.0E-7671No hitNo description
SMARTSM0035528830IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224835IPR007087Zinc finger, C2H2
SMARTSM003550.0124971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3234976IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-55072IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-895124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.25E-695124No hitNo description
SMARTSM003550.02598122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.01698127IPR007087Zinc finger, C2H2
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SuperFamilySSF576673.71E-5125153No hitNo description
Gene3DG3DSA:3.30.160.603.0E-5125153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.066127152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058127157IPR007087Zinc finger, C2H2
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-7161191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.53E-5163191No hitNo description
SMARTSM003550.0089167191IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.907167196IPR007087Zinc finger, C2H2
PROSITE patternPS000280169191IPR007087Zinc finger, C2H2
SMARTSM0035511199224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201224IPR007087Zinc finger, C2H2
SMARTSM0035518227248IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-6238279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.14E-7239295No hitNo description
SMARTSM003550.0017257282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614257287IPR007087Zinc finger, C2H2
PROSITE patternPS000280259282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-5281310IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.8288314IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280290314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MFKDIRRYFC DHCGICRSKK SLITTHILTH HPEKIDNGGK EEEEVSMSNE CQECGATFRK  60
PAHLKQHLQS HSLEVGRPPE KLHQVSLGHA VWYLKRPFVC LVDDCHASYR RKDHLNRHLL  120
QHQGKLFSCP IENCNSKFAF QGNMKRHVKE FHDEGSSSSD AASQKQYVCQ EVGCGKVFKF  180
ASKLRKHEDS HVKLDSVEAF CSEPSCMKYF TNEQCLKAHV QSCHQYINCQ ICGAKQLKKN  240
IKRHLRSHES GVASERIKCD FGGCLHTFST KSNLRQHVKA VHEELKPFAC SFSGCGMRFS  300
YKHVRDNHEK SALHVYVPGD FIESDEQFRS RPRGGRKRTC PTVEMLIRKR VAPPQMDTMM  360
DPGPIQGCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A4e-115321919155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-115321919155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017602924.10.0PREDICTED: transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-146TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0B0NZL80.0A0A0B0NZL8_GOSAR; Transcription factor IIIA
STRINGGorai.009G128000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-149transcription factor IIIA