PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_31899_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 287aa MW: 31961.2 Da PI: 7.6607 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25.2 | 3.4e-08 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++ fC+ ++ lCe C H+ H+ Cotton_A_31899_BGI-A2_v1.0 4 QCDVCNKEEATVFCTADEAALCEACDHGVHHAnklaskHQ 43 7***************************974446666665 PP | |||||||
2 | zf-B_box | 26.5 | 1.3e-08 | 56 | 92 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 + + C+ +++ + lfC++++ lC+dC + +H+ H Cotton_A_31899_BGI-A2_v1.0 56 QVPLCDICQKR-AFLFCQQDRAILCRDCDVPIHSAneH 92 6789****977.********************955664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.362 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.33E-7 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 9.5E-7 | 4 | 43 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.3E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.186 | 55 | 101 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.0E-15 | 55 | 101 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-7 | 56 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.24E-8 | 58 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MKIQCDVCNK EEATVFCTAD EAALCEACDH GVHHANKLAS KHQRFTLLHP CSSSKQVPLC 60 DICQKRAFLF CQQDRAILCR DCDVPIHSAN EHSQRHNRFL LTGVKLSSRS ATYNTTSSSS 120 DGGDSVPEFK VNNPISSISP PNFNPSSNEV DGSTSSISEY LIEMLPGWHV EDLLDSSPSL 180 STFGFCKNDD GMLPFFDPAQ SLYHLPQMEG PIGFNETTMK VDDLSLSEKT VEVPTGQSKE 240 QSIKSPFGRE RRIFVRGYNK RRGKVTMIVI KIKKGRVYKK GWSGFLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016731369.1 | 1e-154 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 6e-78 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A1U8N0M1 | 1e-153 | A0A1U8N0M1_GOSHI; B-box zinc finger protein 21-like | ||||
TrEMBL | A0A2P5QMT3 | 1e-153 | A0A2P5QMT3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G006600.1 | 1e-152 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5400 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-74 | salt tolerance homolog2 |