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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_31896_BGI-A2_v1.0 |
| Common Name | F383_05194 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
SRS |
| Protein Properties |
Length: 307aa MW: 34140.9 Da PI: 7.3785 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_31896_BGI-A2_v1.0 | genome | BGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 228.2 | 1.5e-70 | 83 | 242 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel....k 79
r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++ + + +kr++e+
Cotton_A_31896_BGI-A2_v1.0 83 RQGGINCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQQQEEQHQfRGEIPKRQKENqggvV 165
67999****************************************************99998887767788888888867766 PP
DUF702 80 skkqsalsstklssae..skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ +l++t+ls ++ +++ le ++P+evss+avfrcv+vs++dd +ee+aYqtav+i+GhvfkGiLydqG+e+
Cotton_A_31896_BGI-A2_v1.0 166 VTDVPSLACTRLSPTTttTTSGLELGQFPPEVSSQAVFRCVKVSAMDDVDEEFAYQTAVNIAGHVFKGILYDQGPES 242
677778888888755400455677888************************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MAGFFYLTGN KQEDKEESLH LYRNEEIYNS NNKGFEIWPQ YYYQQPQQAN VVSSTYPFGT 60
GPSRRTIGGG FNLSDESSSS RLRQGGINCQ DCGNQAKKDC LHLRCRTCCK SRGFQCQTHV 120
KSTWVPAAKR RERQQQLATL QQQEEQHQFR GEIPKRQKEN QGGVVVTDVP SLACTRLSPT 180
TTTTTSGLEL GQFPPEVSSQ AVFRCVKVSA MDDVDEEFAY QTAVNIAGHV FKGILYDQGP 240
ESRYTGGGSG SRENSEQQQQ LNLMADTTTT AMATSSNIGT NMLDPSVYPA PINAFIAGTQ 300
FFPHPRS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX583895 | 1e-127 | JX583895.1 Gossypium hirsutum clone NBRI_GE17047 microsatellite sequence. |
