PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31827_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 469aa    MW: 52018.5 Da    PI: 8.1422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31827_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.001883100219
                                 EETTTTEEESSHHHHHHH CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                                 +C++Cgk F ++ ++  H
  Cotton_A_31827_BGI-A2_v1.0  83 VCENCGKEFFSWKSFLEH 100
                                 6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.07E-51335No hitNo description
SMARTSM003552.91335IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-41335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576675.07E-577101No hitNo description
SMARTSM0035528082102IPR015880Zinc finger, C2H2-like
SMARTSM003550.13215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076215242IPR007087Zinc finger, C2H2
PfamPF139121.3E-9215239IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-5292318No hitNo description
PfamPF139126.2E-14294318IPR007087Zinc finger, C2H2
SMARTSM003550.97295317IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307295317IPR007087Zinc finger, C2H2
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAFIVDQQSN FKHFCKICKK GFGCGRALGG HMRAHGIGDE SGHIDGDDPA SDWEDKLGRN  60
VPPSNKRMYA LRTNPNRLKS CRVCENCGKE FFSWKSFLEH GKCSSEDAES LVSSPGSDGD  120
DGETRRGCGW SKRKRSFRAN VGNFNTMCPS SEEEDLAKCL MMLSNATVYP FVTEPEESCA  180
SASKEEERRN TINFIAPIAC RVPMGKAKGV AKGLFECKAC KKVFNSHQAL GGHRASHKKV  240
KGCFAARVDH KQADEDHDVI THEEFFPTKS MSTLQFHQGT NTPLASPSKK KSKVHECSIC  300
YKVFSSGQAL GGHKRCHWIT SNAPDASSLT KFHRFQDQME LNQQTPKFID NSEPLNLKLD  360
LNLPAAGDHH DALRRKHVNP SSFKVSTGIY LQPWLGGDDA KEKEHNQHRM QQVDHDNKCN  420
SSMQNTDEEA DSMVKLAKLS ELKGINMSGC SSPWLQVGIG STTNVGFDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631676.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A0D2LZW30.0A0A0D2LZW3_GOSRA; Uncharacterized protein
STRINGGorai.001G175500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-30C2H2-like zinc finger protein