![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_31809_BGI-A2_v1.0 | ||||||||
Common Name | F383_17896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 28227.2 Da PI: 7.4362 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.8 | 3.1e-18 | 168 | 202 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l Cotton_A_31809_BGI-A2_v1.0 168 CSHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 202 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 9.0E-82 | 3 | 255 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.385 | 162 | 198 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.7E-15 | 162 | 212 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.62E-14 | 166 | 225 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.3E-14 | 166 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.76E-13 | 167 | 214 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 168 | 193 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.1E-16 | 168 | 202 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MDIYGISTSE QLDVDDLLDL SNDEFFPSAS AATSHDQFPP SETPFSDASA ASSSSAALTP 60 SFSLDFNHDI CLPSDDVAEL EWLSQFVEDS FTDFPSYSLP GILNPRNDNS SFSSKARSKR 120 SRAVTTLNGT NWTTTTSGAA GTLTGKTKTK REIQRQASPA TVEGMRRCSH CASEKTPQWR 180 TGPLGPKTLC NACGVRYKSG RLVPEYRPAA SPTFVLTQHS NSHRKVLELR RQKEEQSTRR 240 QQEQVCRQQH RQQVC |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00415 | DAP | Transfer from AT3G60530 | Download |
![]() |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017608771.1 | 0.0 | PREDICTED: GATA transcription factor 4-like | ||||
Refseq | XP_017608772.1 | 0.0 | PREDICTED: GATA transcription factor 4-like | ||||
Swissprot | O49743 | 8e-77 | GATA4_ARATH; GATA transcription factor 4 | ||||
TrEMBL | A0A0B0NLA0 | 0.0 | A0A0B0NLA0_GOSAR; GATA transcription factor | ||||
STRING | Gorai.004G164700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3203 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60530.1 | 6e-65 | GATA transcription factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|