PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31698_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 408aa    MW: 44680.3 Da    PI: 4.7055
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31698_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06444539
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                +C+ +++++   +C+++  +lC +C  + H+       H++
  Cotton_A_31698_BGI-A2_v1.0  4 ICDFCGNQPSAVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                                7*****************************65677777765 PP
2zf-B_box22.52.4e-074689441
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                  C++++++++   C + ++++C++C l +H+       H++++
  Cotton_A_31698_BGI-A2_v1.0 46 LLCERCNSQPAFVRCVEERVYFCQNCDLMGHSTstlnstHRRQT 89
                                57*****************************6688888888765 PP
3CCT639.5e-22351394144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Cotton_A_31698_BGI-A2_v1.0 351 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 394
                                 889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
CDDcd000212.06E-8447No hitNo description
SMARTSM003361.2E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.7024390IPR000315B-box-type zinc finger
CDDcd000216.43E-54790No hitNo description
SMARTSM003360.314890IPR000315B-box-type zinc finger
PfamPF062032.0E-16351393IPR010402CCT domain
PROSITE profilePS5101715.418351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGYICDFCGN QPSAVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
VEERVYFCQN CDLMGHSTST LNSTHRRQTI NCYSGCPSSA ELSSIWSFFS QSPSAGESTC  120
EQELRQMSIT ETSWYPTENT ISQNDTGDAE VNRDYNVDRG SSWSGSSIPE LRSGPGLLDQ  180
PAGTADTSLS ELSCPQTKCP GVCEDDLYDD FNMDEIDLNL EKYEELFGLT LNHSEELFGN  240
GGIDSLFGTK DMSATDSYQG AVAAEGSSVG LVNAIQPACS NAASADSMMS NKTDSILCFT  300
ARQDHSSFSF SGLTGESSGG DYQDCGASSL LLMGEVPWCP PSEGPFSSAT RSDAVMRYKE  360
KKKTRKFEKR VRYASRKARA DVRKRVKGRF VKAGDDYDYD PLNPTRSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649541.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_017649619.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-145COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1U8MT760.0A0A1U8MT76_GOSHI; zinc finger protein CONSTANS-LIKE 9-like
STRINGGorai.001G223800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-109CONSTANS-like 9