PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31397_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 303aa    MW: 33041.2 Da    PI: 8.2663
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31397_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.2e-3277133259
                 ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                                 ++vrY+eClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e 
  Cotton_A_31397_BGI-A2_v1.0  77 KAVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEG 133
                                 689**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.1E-2979131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2579137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-3180131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.34881130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.1E-31213284IPR009057Homeodomain-like
SuperFamilySSF466891.11E-19215283IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-27222278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MELSNQEGEI PIPLNSTYGG GHGHGHGHGH GHGHGHMIHH DPAAPHNHII PSSAPPILSN  60
GPSSLSTNLD DHVPYKKAVR YRECLKNHAA AMGGNATDGC GEFMPSGEEG TIEALNCSAC  120
NCHRNFHRKE IEGEPSSFDC YPLHSPHLSS RVGRKLILGH HKSILPPEAL GYPTGTLIHS  180
RAAPTPHQMI MSYNMGSLPS ESDEQPEDGG GVAGSRPLQL MKKRFRTKFT QEQKEKMLNF  240
AEKVGWKIQK QEEAVVQQFC QEIGVKRRVL KVWMHNNKHN LARKNPCNST ATATAAAPTT  300
TAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-242232801875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622582.10.0PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S03e-79ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A2P5YLS80.0A0A2P5YLS8_GOSBA; Uncharacterized protein
STRINGGorai.011G090900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-78homeobox protein 31