PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31377_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 165aa    MW: 18516.9 Da    PI: 7.9622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31377_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000132244123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C+ C + F++   L  H+++H
  Cotton_A_31377_BGI-A2_v1.0 22 YTCSFCERGFRSAQALGGHMNVH 44
                                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.1E-71949No hitNo description
Gene3DG3DSA:3.30.160.602.2E-42048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-52245IPR007087Zinc finger, C2H2
SMARTSM003550.0072244IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4062249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MATNQGFEED YLSGFSWPPR SYTCSFCERG FRSAQALGGH MNVHRRDKAR LRQLPPPMDH  60
HGQSPFLNLN PNPNSSSSSL VSSPLPCEMK KWLVNETVVD STDSTSMKGA KPLSGVKEFK  120
DYGCKNKFMK KKKNNVNLDL DLDLEIGVVS DSKEDLDLEL RLGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-131744229superman protein
2l1o_A4e-131744229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633267.11e-121PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_017633268.11e-121PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0B0PFV24e-89A0A0B0PFV2_GOSAR; Transcriptional regulator SUPERMAN-like protein
STRINGGorai.005G047800.11e-81(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-24C2H2 family protein