PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cotton_A_31232_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 123aa MW: 13898.2 Da PI: 5.7252

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31232_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33.4	9.7e-11	97	120	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWtp+LH +Fv+ ve+LGG+ Cotton_A_31232_BGI-A2_v1.0 97 PRLRWTPDLHLSFVHSVERLGGQA 120 8*********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-8	93	120	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MIEGMVEKHD EEKRVDNEQA ENISAMSFPS QKCSSLDLNE EASSKEDYDY NIIGNGKQGD 60 EIEKTSEGNS SNNNNNIVGE KGKGRRRVRQ YVRSKLPRLR WTPDLHLSFV HSVERLGGQA 120 SNS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX596407	7e-42	JX596407.1 Gossypium hirsutum clone NBRI_GE32984 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016754151.1	3e-82	PREDICTED: uncharacterized protein LOC107962325
TrEMBL	A0A2P5XZ29	2e-83	A0A2P5XZ29_GOSBA; Uncharacterized protein
STRING	Gorai.010G159700.1	3e-80	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-13	G2-like family protein