PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31202_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 457aa    MW: 50163.5 Da    PI: 6.8454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31202_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15294339555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Cotton_A_31202_BGI-A2_v1.0 294 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 339
                                 9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.815289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-19292362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-17294343No hitNo description
Gene3DG3DSA:4.10.280.105.7E-18294348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-13294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSQCVPSWEL DDNNPLTTRH HSFRFNSNST APDVPMLDYE VAELTWENGQ LAMHSLGPPR  60
AVAKQLNATT WDKPRAGGGG TLESIVNQAT CFPYGSKDSV GVGGDELVWL DRHRVSAAAV  120
SSSATMTMDA LVPCSEDKTT TVHVLESMPG LSGGGTCMMG CSTRVGSCSG TVNTQDDVTR  180
KRAKAARVQV APPEWEQSAS ASATFGRDSH RNVTIDTYDK DFGVGFTSIS HGSIENTKTA  240
TDNDHDSASH SKPQAKSYSI IYYNYFLEET GEEDKKETMK SSISTKRSRA AAIHNQSERK  300
RRDKINQRMK TLQKLVPNSS KTDKASMLDE VIEYLKQLQA QVQMMSRMNL PSMMLQQQLQ  360
MSMMAPMGMG MSVMDMNFMG RPNIIGISPV LSNPFMTMNT PWDGSNNNDR LQQAASMTDP  420
LSTFLASQSQ PMTMDAYSRM AAMCQQMQQP PASSSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297302ERKRRD
2298303RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604059.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-108UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A2P5Y1J80.0A0A2P5Y1J8_GOSBA; Uncharacterized protein
STRINGGorai.008G106900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]