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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_31091_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 505aa MW: 56462.7 Da PI: 6.4688 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 155 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cotton_A_31091_BGI-A2_v1.0 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204 78*******************......55************************998 PP | |||||||
2 | AP2 | 43 | 1.1e-13 | 247 | 297 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ + +g Cotton_A_31091_BGI-A2_v1.0 247 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDRAAINCNG 297 89********.7******5553..2.26**********99*********988665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-9 | 155 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-15 | 155 | 213 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.728 | 156 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-17 | 156 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-31 | 156 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.02E-11 | 156 | 211 | No hit | No description |
CDD | cd00018 | 1.38E-24 | 247 | 307 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-17 | 247 | 307 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-9 | 247 | 297 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.343 | 248 | 305 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-16 | 248 | 305 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.2E-31 | 248 | 311 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-5 | 249 | 260 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-5 | 287 | 307 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MWDLNDSPFH QPIDDESEGC CSSQKTSIDG DEDKGKRVGS VSNSSSSALV LEEGSEEEDG 60 ERGRGGLKKR SSKIFGFSVP QEEEEEESME SEAGPVTRQF FPVDQEQETG SSSGFPQAHW 120 VGVRFCQSEP HAPEKSGEVS QPMKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV 180 YLGGFDTAHA AARAYDRAAI KFRGLEADIN FSIQDYEEDL KQMSNLTKEE FVHVLRRQST 240 GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIEAARAYDR AAINCNGKDA 300 VTNFDPSIYD NELINSGKTS ENAGDHNLDL SLGNSNPNQN SAKPNADRQS GTSYQQHSLP 360 LEATDWQCRG FRSMQESRRT DEAGHGYSEE ETMQLLSQTH IHSPAVSVKC NEMQRYGQLR 420 RPGGNSNMFH IVPQHINPSP YQIHIPRSSN GGRIGSDLSL STSDQQWQSG PHHQLFGNSA 480 ASSGFPSQSR PSQTWLHQNG FHSLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634657.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | P47927 | 1e-126 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A1U8KFT6 | 0.0 | A0A1U8KFT6_GOSHI; floral homeotic protein APETALA 2-like isoform X1 | ||||
STRING | Gorai.008G077800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-119 | AP2 family protein |