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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_31085_BGI-A2_v1.0 | ||||||||
Common Name | F383_26352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26586.9 Da PI: 7.3455 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.8 | 6.2e-16 | 98 | 144 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P+a K +Ka++L +++eY+k+Lq Cotton_A_31085_BGI-A2_v1.0 98 VHNLSEKRRRSRINEKMKALQNLVPNA-----NKTDKASMLDEVIEYLKHLQ 144 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.42E-16 | 90 | 148 | No hit | No description |
SuperFamily | SSF47459 | 1.15E-19 | 91 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-19 | 91 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.479 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-13 | 98 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-16 | 100 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAYFGGLTEN PRRFSRSEAP PGGRAVKKGM IDYCERESGG SGNMIRAAGE NGTTDDQDCE 60 SEFEICPRQE GPEAVVDQAP PKSAPSRSSS KRNRAAEVHN LSEKRRRSRI NEKMKALQNL 120 VPNANKTDKA SMLDEVIEYL KHLQLQVRIL SMRNGLSMHP MCLPGVPQPV QFSQTRIDTN 180 ASFTVPATQE TQAQMVFDIP NQCSSSNPEL VLDLPNMISS NTSVGLEFWN QSRPMDPFR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636287.1 | 1e-179 | PREDICTED: transcription factor SPATULA-like | ||||
Swissprot | Q9FUA4 | 4e-43 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | A0A0B0MR67 | 1e-178 | A0A0B0MR67_GOSAR; Transcription factor SPATULA-like protein | ||||
STRING | Gorai.008G077300.1 | 1e-168 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4199 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 8e-42 | bHLH family protein |