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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_30905_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 503aa MW: 58497.5 Da PI: 6.5769 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.8 | 2e-24 | 71 | 162 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk 80 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w++++ Cotton_A_30905_BGI-A2_v1.0 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvngVTQWYISQ 152 69********************8888.******************************************998766789***** PP FAR1 81 leleHnHela 90 +++ HnHel Cotton_A_30905_BGI-A2_v1.0 153 FSNVHNHELL 162 ********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-22 | 71 | 162 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.7E-23 | 294 | 387 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MTMKPSNNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSTSSS SEAVFMPYVG 60 QIFKTDEDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVNGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKSV QENDALLTEK 240 RENDTLEFLE ACKAMAERDA DFVYDYTTDE NSKVENISWS YADSVRAYTV FGDVVTFDTT 300 YRSITYGLLL GVWFGIDNHG KPVFLGCALL QDESLNSFAW ALQTFLRFMR GRCPQTVLTD 360 IDSSLRDAIA RELPDTKHVI CSWHVHSKLS SWFMPLLGSQ YEEFKAEFDM LCHLEGIEEF 420 EHQWNHLVAR FGLASDKHIA LLFSYRTSWP LCYIRSYFLA RSMTAEFYQS LDEFFKRILS 480 GQTCLQLFFE QVCWLGMFGL LQI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643737.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A0D2RKI5 | 0.0 | A0A0D2RKI5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G129200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1765 | 26 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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