PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30811_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 548aa    MW: 60101 Da    PI: 4.7198
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30811_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.96.1e-1401715331374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 lv++L++cAeav++++l+la+al++++  las++  +m+++a+yf+eALa+r++r       ++pp + ++ +  ++   +  
  Cotton_A_30811_BGI-A2_v1.0 171 LVHTLMACAEAVQQDNLKLADALVKHIGLLASSQTGAMRKVATYFAEALARRIYR-------IFPPDSLDP-SYNDK--LQMH 243
                                 689***************************************************9.......566666653.23344..3446 PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                                 f+e++P+lkf+h+taNqaIlea++ ++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La
  Cotton_A_30811_BGI-A2_v1.0 244 FYETCPYLKFAHFTANQAILEAFSMANRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDDTDALQQVGWKLA 326
                                 *********************************************************************************** PP

                        GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 ++Ae++g++fef+ +va++l+dle+e+L+++p   E++aVn v++lh ll++++ +e+    v++ +k ++Pk+v+vveqea+
  Cotton_A_30811_BGI-A2_v1.0 327 ELAERIGIEFEFRGFVANSLADLEPEMLDIRPpeIEVVAVNAVFELHPLLARPGGIEK----VVSSIKAMKPKIVTVVEQEAN 405
                                 ********************************9899*********************9....********************* PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 hn++ Fl+rf+eal+yys+lfdsle +  +  +++  +++ +lgr+i+nvvaceg +r+erhe l +Wr r+e+aGF+pv+l+
  Cotton_A_30811_BGI-A2_v1.0 406 HNGPVFLDRFTEALHYYSTLFDSLEGSGVAPPSQDLAMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGFSPVHLG 488
                                 ************************777666667889999999***************************************** PP

                        GRAS 331 ekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Cotton_A_30811_BGI-A2_v1.0 489 SNAYKQASMLLALFAsGDGYRVEENNGCLMLGWHTRPLIATSAWR 533
                                 ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011299.5E-3137109No hitNo description
PfamPF120413.5E-3137102IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098569.627145512IPR005202Transcription factor GRAS
PfamPF035142.1E-137171533IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MKRDHQEISG SGSNPAESSS IKGKLWEEDP DAGGMDDELL AVLGYKVRSS DMADVAQKLE  60
MLEKVMGTAQ EDGISQLGDT VHFNPSDLSG WVQNLLIEFN GSTTTPDPNF NDDSEYDLRA  120
IPGVAAYPPV KSDPGLENTR KRAKTESSSS SSSTTTRPVV LIDSQETGVR LVHTLMACAE  180
AVQQDNLKLA DALVKHIGLL ASSQTGAMRK VATYFAEALA RRIYRIFPPD SLDPSYNDKL  240
QMHFYETCPY LKFAHFTANQ AILEAFSMAN RVHVIDFGLK QGMQWPALMQ ALALRPGGPP  300
AFRLTGIGPP QPDDTDALQQ VGWKLAELAE RIGIEFEFRG FVANSLADLE PEMLDIRPPE  360
IEVVAVNAVF ELHPLLARPG GIEKVVSSIK AMKPKIVTVV EQEANHNGPV FLDRFTEALH  420
YYSTLFDSLE GSGVAPPSQD LAMSELYLGR QICNVVACEG MDRVERHEPL TQWRTRMETA  480
GFSPVHLGSN AYKQASMLLA LFASGDGYRV EENNGCLMLG WHTRPLIATS AWRLAGTESG  540
SELTQELS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-7116653214378Protein SCARECROW
5b3h_A1e-7116653213377Protein SCARECROW
5b3h_D1e-7116653213377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0062690.0DQ006269.1 Gossypium hirsutum GIA/RGA-like gibberellin response modulator (GAI) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667033.10.0PREDICTED: DELLA protein GAI-like
RefseqXP_017606442.10.0PREDICTED: DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A1U8HSU30.0A0A1U8HSU3_GOSHI; DELLA protein GAI-like
STRINGGorai.001G089400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein