PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30668_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 250aa    MW: 27014.2 Da    PI: 5.2821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30668_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004188110123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++C++ F ++  L  H++ H
  Cotton_A_30668_BGI-A2_v1.0  88 FPCNYCHRKFFSSQALGGHQNAH 110
                                 89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.05E-686115No hitNo description
PROSITE profilePS5015711.17788115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKPIIDLEVD APETGSDVSS QVASNLYTQE ASVAPSNETN SDPVSLDLTL CFNIDGRDSV  60
GLSFTSTSES SNIDPALRTT ASAIPRVFPC NYCHRKFFSS QALGGHQNAH KRERTLAKRA  120
MRMGIFSDRY ASLSLATLPL HGMATSFRSL GIKAHCLAHQ SFAPATRTPD TRNNAIVEHG  180
YLGLPIFMED DETELLWPGS FRQIAQAAAG GSNADHPGFV LPGSSNMNFL EVKEPVDLED  240
SSAPDLTLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641495.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392638e-54ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A1U8NEC00.0A0A1U8NEC0_GOSHI; zinc finger protein 4-like
STRINGGorai.001G196800.11e-180(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-56zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]