 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_30465_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 189aa MW: 21481.1 Da PI: 9.7877 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_30465_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60 | 3.9e-19 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k
Cotton_A_30465_BGI-A2_v1.0 35 RKKLRLSKEQSRLLEESFRQNHTLNPRQKEALASELKLRPRQVEVWFQNRRARSK 89
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 115.4 | 3.3e-37 | 35 | 123 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83
+kk+rlskeq++lLEesF+++++L+p++K++la+eL+l+prqv+vWFqnrRAR k+kq+E+++++Lkr+++ l+++n++L++e
Cotton_A_30465_BGI-A2_v1.0 35 RKKLRLSKEQSRLLEESFRQNHTLNPRQKEALASELKLRPRQVEVWFQNRRARSKLKQTEMEFQYLKRWFEFLTKQNQELQSE 117
69********************************************************************************* PP
HD-ZIP_I/II 84 veeLree 90
veeLr +
Cotton_A_30465_BGI-A2_v1.0 118 VEELR-A 123
****9.4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MNRLPSPGSD DEWIASTMEV VVDEENTTND GVVPRKKLRL SKEQSRLLEE SFRQNHTLNP 60
RQKEALASEL KLRPRQVEVW FQNRRARSKL KQTEMEFQYL KRWFEFLTKQ NQELQSEVEE 120
LRALQVGPPT VISPHSREPL PASTLTTCPR CERVTTISSR GAGLINTTTS TNNTSTTSAL 180
QSRPSSAAG
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
