PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_30142_BGI-A2_v1.0 | ||||||||
Common Name | F383_28343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 488aa MW: 54571.3 Da PI: 7.9767 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 1e-15 | 157 | 206 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ + Aa+a+++a+ k++g Cotton_A_30142_BGI-A2_v1.0 157 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDAPHAAARAYDRAAIKFRG 206 78*******************......55************************997 PP | |||||||
2 | AP2 | 44.1 | 5.1e-14 | 249 | 299 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A++ + +k+++lg f+t+ eAa+a+++a+ k +g Cotton_A_30142_BGI-A2_v1.0 249 SKYRGVTLHK-CGRWEARLGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 299 89********.7******5553..1.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.0E-8 | 157 | 206 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-15 | 157 | 215 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.0E-30 | 158 | 220 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.148 | 158 | 214 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-16 | 158 | 214 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.26E-11 | 158 | 213 | No hit | No description |
SuperFamily | SSF54171 | 4.64E-17 | 249 | 309 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-9 | 249 | 299 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.17E-24 | 249 | 309 | No hit | No description |
SMART | SM00380 | 2.1E-30 | 250 | 313 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.672 | 250 | 307 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-16 | 250 | 307 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-6 | 251 | 262 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-6 | 289 | 309 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MWDLNDCPYK ARDDEYEGCS TQRTSKYGDA GNCKRFGSMS NSCSSAVVIE DGSEEEEEDR 60 EGVKTALKKK GSKIFGFSVP YDEEESMESS DPTPVTRQLF PLDEDQEMRT GTGPGFPRAH 120 WVGIKFRQSE PYVCGGKSVE SSGPMKKSRR GPRSRSSQYR GVTYYRRTGR WESHIWDCGK 180 QVYLGGFDAP HAAARAYDRA AIKFRGVEAD INFSVEDYEE DLKQMRNLTK EEFVHVLRRQ 240 STGFPRGSSK YRGVTLHKCG RWEARLGQFL GKKYVYLGLF DTEIEAARAY DKAAIKCNGK 300 DAVTNFDPSI YGNELNNGGE TSGNAGGGHN LDLSLGNSVS KQNNPESGPP QTDWRYQGFK 360 PEEIQQQEQA CRGDDPHRRS DKHIHSPLSI KSNEMQIYGQ LRRPGPGENY MSHILPPRII 420 NPSIYQIHIA SNSGNGVQIG SDVSLSRSAQ QGPHQLIANA GAASSGFPTQ TWQQRNGFHS 480 FITPSRHF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646959.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | P47927 | 1e-120 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0B0MUH4 | 0.0 | A0A0B0MUH4_GOSAR; Floral homeotic APETALA 2-like protein | ||||
STRING | Gorai.011G106200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-101 | AP2 family protein |