PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30115_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 311aa    MW: 34125.4 Da    PI: 6.7654
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30115_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.19.7e-392989262
                      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                                +++alkcprCds ntkfCyynny+lsqPryfCk+CrryWtkGG lrnvPvGgg+rk k+s+
  Cotton_A_30115_BGI-A2_v1.0 29 HHQALKCPRCDSFNTKFCYYNNYNLSQPRYFCKNCRRYWTKGGVLRNVPVGGGCRKAKRSK 89
                                57899****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-282987IPR003851Zinc finger, Dof-type
PfamPF027015.1E-333187IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.323387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQDIHLIEGG RLFNGGGDGG GGDRKLRAHH QALKCPRCDS FNTKFCYYNN YNLSQPRYFC  60
KNCRRYWTKG GVLRNVPVGG GCRKAKRSKT KPSSETTVSA TAVSALPHPE QQQQRQHQNS  120
DQRKADSHSN TESSSRNAAN CKVAVTNNNN NNSNSNNNSS SVGTTEAASA ITSCSTFYGN  180
PNNLGLEPGL LEQGSDGGIF AEIGSLTSLI TSPNNETLSF DFGTVLNRAG QWQPQQMTMS  240
MGGEEITKGL LDQTVQIEQS NLNIKLDSVF QPLDWEGNED QGLFGLPSTV DQTYWSQNQW  300
TDEDRPTLYP P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816GGRLFNGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3932379e-59GQ393237.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0202 SSR marker CGR5097 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622517.10.0PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBLA0A2P5W5A20.0A0A2P5W5A2_GOSBA; Uncharacterized protein
STRINGGorai.007G040400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.12e-40OBF binding protein 4