PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29988_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 275aa MW: 30858.5 Da PI: 5.7848

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29988_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.8	8e-08	162	209	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a +L + ++Y++sLq Cotton_A_29988_BGI-A2_v1.0 162 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMALMLDEIINYVQSLQ 209 8*************************8....355889999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.84E-16	156	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.35E-9	156	213	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-15	158	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.958	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-5	162	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-7	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MADFSAQSYR QPFPFLDIDP TMESLTQFAE LNPQSFILDN SAFNFQTFFP LSINDSLFSN 60 QASEGETMSG FIHNSNQSSV SAQPIFSAKT EMEEISNKRK ALDISESSSG NSSSTSPQVS 120 ETGIKRRNNS GRGKRAKSNE KEMEKPKEVV HVRARRGQAT DSHSLAERVR RGKINERLRC 180 LQDIVPGCYK TMGMALMLDE IINYVQSLQN QVEFLSMKLT AASTYYDFNS ESDAMERMQR 240 EKAEEAKELE RLMREGYVGI GGVACFHSSS TYGPL

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX593351	1e-35	JX593351.1 Gossypium hirsutum clone NBRI_GE29020 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017647691.1	0.0	PREDICTED: transcription factor BEE 3-like
Swissprot	Q8GWK7	1e-66	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A1U8LI13	0.0	A0A1U8LI13_GOSHI; transcription factor BEE 1-like isoform X2
STRING	Gorai.001G074900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	2e-60	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]