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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29872_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 35688.2 Da PI: 7.8494 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.6 | 1.3e-33 | 179 | 236 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers edp+vv++tYeg+Hnh+ Cotton_A_29872_BGI-A2_v1.0 179 EDGYRWRKYGQKAVKNSPYPRSYYRCTSPKCGVKKRVERSFEDPSVVITTYEGKHNHH 236 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.7E-35 | 163 | 238 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-29 | 171 | 238 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.305 | 173 | 238 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 178 | 237 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 179 | 236 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MSSNEKNDPQ HNYDPFQGFN RSATFPFFDD NSSCIYNQSA ATPPPAFDPS YMTFTDCLNG 60 SNVIDYNSFS RAFDMSCSSS DVVSPMDDNT ATDNSKKIPT CADNNNNISE NPSTPNSSVS 120 SSSNEDEDSS KAKKGKQPKG CEDHGDDKSK KVNKATKKEK RQKEPRFAFL TKSEIDHLED 180 GYRWRKYGQK AVKNSPYPRS YYRCTSPKCG VKKRVERSFE DPSVVITTYE GKHNHHIPAT 240 LRGHAAGMFS PPIMSGSMGP TFPHEFLTHF LPSPSNNPAA HANSMHHQTQ QQQQQQQLQV 300 RDYGLLQDLV SSFTRSQGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-32 | 171 | 239 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-32 | 171 | 239 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669819 | 0.0 | KF669819.1 Gossypium hirsutum WRKY transcription factor 100 (WRKY100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614718.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q8VWJ2 | 3e-56 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A1U8PJ47 | 0.0 | A0A1U8PJ47_GOSHI; probable WRKY transcription factor 71 | ||||
STRING | Gorai.012G040700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 3e-55 | WRKY DNA-binding protein 28 |
Publications ? help Back to Top | |||
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