![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_29854_BGI-A2_v1.0 |
Common Name | F383_24474 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
GRAS |
Protein Properties |
Length: 653aa MW: 72264.7 Da PI: 5.467 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_29854_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Gar&pid=Cotton_A_29854_BGI-A2_v1.0) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 437.7 | 8.4e-134 | 287 | 652 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaa 80
lv+lLl+cAeav+++d a++++ +l+ ++p gd+mqR+a++fteAL+arla ++++++++ +p + ++ns e+l++
Cotton_A_29854_BGI-A2_v1.0 287 LVHLLLACAEAVAKEDYLSARKYIHHLNRVVTPLGDSMQRVASCFTEALSARLAAtmtTSPSTSSSPKPYSPFPSNSLEVLKI 369
68***************************************************99522234555555555666678******* PP
GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163
+++ ++++P++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s e+++etg+
Cotton_A_29854_BGI-A2_v1.0 370 YQIVYQACPYIKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----SIEAIKETGR 448
*********************************************************************....9********* PP
GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
L+++A++l++pfef++ + ++le+++ ++++ + gEalaVn v lhr++ +l ++L ++++ P++v++veqea
Cotton_A_29854_BGI-A2_v1.0 449 CLTELAHSLHIPFEFHP-IGEKLENIKAHMFNRRVGEALAVNAVNTLHRVP--GNCLG----NLLAMIRNQAPNIVTLVEQEA 524
*****************.7*******************************9..44444....5******************** PP
GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+vaceg+er+erhe+lekWr+ +e GFk vpl
Cotton_A_29854_BGI-A2_v1.0 525 SHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGSERIERHERLEKWRKLMEGKGFKGVPL 607
*********************************************************************************** PP
GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
s +a++q k ll ++ dgyr+ e++g+l+lgW+dr+++++SaWr
Cotton_A_29854_BGI-A2_v1.0 608 SANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 652
********************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 653 aa
Download sequence Send
to blast |
MSMINSLCGS MGSIKSENSC ESLVEPKKIA PPSCDMEQNS LTPPSLNFPP VKFELDGDVE 60 VQSPDSSIWE TFFSDHFDAD FMVSSPVRNL PSPQISSYNF NNVMSMQGQS ILGCSPPRFS 120 PQLGSYSSSS GNKGKGQSPL HRVFNSPNDQ FMQVESLSLP AIEEFLDDGY EDQYQTTKIS 180 GIGTTNNMFE MPTTGPSMLD CISMPNSSTF CGSASETTSS QLDQEQHYQL NSVSRAPLSQ 240 QLQQEKQQEK QISAAAAEQQ QHQNLGHTLM VPIPIGPEQE QDSGLQLVHL LLACAEAVAK 300 EDYLSARKYI HHLNRVVTPL GDSMQRVASC FTEALSARLA ATMTTSPSTS SSPKPYSPFP 360 SNSLEVLKIY QIVYQACPYI KFAHFTANQA IFEAFETEER VHVIDLDILQ GYQWPAFMQA 420 LAARPSGAPF LRITGVGPSI EAIKETGRCL TELAHSLHIP FEFHPIGEKL ENIKAHMFNR 480 RVGEALAVNA VNTLHRVPGN CLGNLLAMIR NQAPNIVTLV EQEASHNGPY FLGRFLEALH 540 YYSAIFDSLD ATFPPDSAQR AKVEQYIFAP EIRNIVACEG SERIERHERL EKWRKLMEGK 600 GFKGVPLSAN AVTQSKILLG LYSCDGYRLT EDKGCLLLGW QDRAILAASA WRR
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX578473 | 1e-136 | JX578473.1 Gossypium hirsutum clone NBRI_GE10507 microsatellite sequence. |