PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 302aa MW: 33129.5 Da PI: 6.5117

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29834_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109	2.4e-34	39	93	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Cotton_A_29834_BGI-A2_v1.0 39 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 93 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-33	36	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.095	36	96	IPR017930	Myb domain
SuperFamily	SSF46689	1.77E-17	38	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-24	39	94	IPR006447	Myb domain, plants
Pfam	PF00249	9.1E-9	41	92	IPR001005	SANT/Myb domain
Pfam	PF14379	7.6E-25	137	183	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MYSAIRSLPL DGRVGDYQGS LDGTNLPGDA CLVLTTDPKP RLRWTAELHE RFVDAVTQLG 60 GPDKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSCKE SIDNSKDASC VAESQDTGSS 120 TTSSSRMVAQ DLNDGYQVTE ALRAQMEVQR KLHEQLEVQH RLQLRIEAQS KYLQSMLEKA 180 CKALNDQDQA ASTGLEAARE ELSELAIKVS NDCQGMIPPH DNIKLPSLSE LAVVLENNRT 240 SNMPGRIGDC SVESCLTSSG SPVSSQAGIM KKRPRSMFGN GEPLPLDGNI RQEIEWGMPN 300 IS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	39	95	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	39	95	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608816.1	0.0	PREDICTED: protein PHR1-LIKE 3-like isoform X1
Swissprot	Q8LAJ7	1e-144	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A0B0PDH2	0.0	A0A0B0PDH2_GOSAR; Myb family transcription factor APL
STRING	Gorai.011G158500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-133	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]