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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29686_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 26921.3 Da PI: 7.7841 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00053 | 155 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H Cotton_A_29686_BGI-A2_v1.0 155 HECSLCGAEFSSGQALGGHMRRH 177 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.2E-10 | 80 | 105 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.51E-7 | 81 | 103 | No hit | No description |
SMART | SM00355 | 0.45 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.51E-7 | 150 | 177 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 154 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 155 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 155 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGSSPSTTAT TSSGAESGRN SDDWRGFGSP TTSVELAEST EEDEDMANCL ILLARGQTGK 60 LAPEPVSIAT TSKTITGTYV HQCKTCNRCF PSFQALGGHR ASHKKPKVAN IEENNKGLMF 120 MKEDVQQPFN NMNTTLSLQI TNKPTLCHIS KPKVHECSLC GAEFSSGQAL GGHMRRHRTI 180 PNAAAAAATT IVRPESDDKP KKPRTVLQLD LNLPAPEDDH QRETKFSFAS KQDKLVLFSA 240 SSLVDCHY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 205 | PKKPRTV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605618.1 | 0.0 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A0A1U8JIL9 | 0.0 | A0A1U8JIL9_GOSHI; zinc finger protein ZAT5-like | ||||
STRING | Gorai.006G161200.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6347 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 6e-52 | C2H2 family protein |