PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29570_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 643aa    MW: 70942 Da    PI: 5.3453
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29570_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3251.4e-992856422374
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                 +++L+++Ae +++gd  laq +Larl+++ sp g+p+ R+a+yf+eAL+  l        ++ ++s+  ++n++ ++ a+k f
  Cotton_A_29570_BGI-A2_v1.0 285 IDQLIQAAELIETGDPVLAQGILARLNHQLSPVGKPFIRAAFYFKEALQLLLRF------NTTNTSTLYTTNMIFKIGAYKSF 361
                                 689**********************************************98886......788888888899*********** PP

                        GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                 se+sP+++f ++t+Nqa+le +eg++rvHiiDfdi++G+QW++L+q+L  R++++p ++iT+++ p+s ++ el  t e+L++
  Cotton_A_29570_BGI-A2_v1.0 362 SEISPTVQFVNFTCNQALLEVFEGCNRVHIIDFDIGYGGQWASLMQELVLRNGDAPCMKITAFACPTSYDEFELGFTIENLKH 444
                                 *********************************************************************************** PP

                        GRAS 168 fAeelgvpfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
                                 +A+e+++ f+++++  ++l++ + ++L  ++ ++E++aVnl +  ++ +      +s+ + +L++vk+lsPk+vv +++ +d+
  Cotton_A_29570_BGI-A2_v1.0 445 YANEINMGFDIEIVSLEALNSCSWSSLplHFGENETIAVNLPIGSFSNY------PSTLPLILRFVKQLSPKIVVSSDRGCDR 521
                                 *************99999999999987446667**********888877......444567********************** PP

                        GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                 ++ +F +++++al+ ys l++sl+a    + ++  k+Er++l+++i+++v  ++++     e+   Wr+ + ++GF+p+++s+
  Cotton_A_29570_BGI-A2_v1.0 522 TDVPFPHHIIHALQSYSGLLESLDAV-NMNLDALEKIERFFLQPSIEKIVLGRHRS----LERRPPWRSLFIQSGFSPLTFSN 599
                                 ***********************766.45669999****************99998....88889****************** PP

                        GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++++qa++l+++++ +g++ve+++ +lvl+W++r+L+++SaWr
  Cotton_A_29570_BGI-A2_v1.0 600 FTESQAECLVQRTPIQGFHVEKRQSALVLCWQRRELIAASAWR 642
                                 ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.768258622IPR005202Transcription factor GRAS
PfamPF035145.0E-97285642IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MNAMPLSFEE FQGKGALDFA SSTSSCSNSS LLLQHQQQKK WQNNKESCCY VGFEPTSTRS  60
PSPPTSSSTV SSSFGGGSGG ASTDSSGVAE TAAVSKGKSQ SFDTGTGKCG LSLEDWENDQ  120
SILRLIMGDV DDPSLGLNKI LQPPSGSGGG GGSSENMEFN AGFGMADHSF GFDSITSSVS  180
LMNNDMVSCS NPVFDQNQAE FTQNPFMFFP SYAAEMQEHN LLSPPPPKRF NSGTSGPNYQ  240
VPKVQFSASG PEHYLRRQQL LHQRPTTPKI VTDEMANQQL QQAIIDQLIQ AAELIETGDP  300
VLAQGILARL NHQLSPVGKP FIRAAFYFKE ALQLLLRFNT TNTSTLYTTN MIFKIGAYKS  360
FSEISPTVQF VNFTCNQALL EVFEGCNRVH IIDFDIGYGG QWASLMQELV LRNGDAPCMK  420
ITAFACPTSY DEFELGFTIE NLKHYANEIN MGFDIEIVSL EALNSCSWSS LPLHFGENET  480
IAVNLPIGSF SNYPSTLPLI LRFVKQLSPK IVVSSDRGCD RTDVPFPHHI IHALQSYSGL  540
LESLDAVNMN LDALEKIERF FLQPSIEKIV LGRHRSLERR PPWRSLFIQS GFSPLTFSNF  600
TESQAECLVQ RTPIQGFHVE KRQSALVLCW QRRELIAASA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-292846424375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3951681e-115GQ395168.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2191 SSR marker DPL0796 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637201.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813161e-168SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2P5Y8E50.0A0A2P5Y8E5_GOSBA; Uncharacterized protein
STRINGGorai.008G106100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-162GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]