PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 142aa MW: 15790.9 Da PI: 10.8085

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29346_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.9	1.7e-20	77	125	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +grW+AeIrd g+r r +lg+f+taeeAa a+++a+ kl+g Cotton_A_29346_BGI-A2_v1.0 77 RYRGVRQRP-WGRWAAEIRD----GRRMRLWLGTFDTAEEAAVAYDQAAVKLRG 125 8******.******....336***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	1.6E-38	3	141	IPR017392	AP2/ERF transcription factor ERF/PTI6
CDD	cd00018	3.92E-29	76	132	No hit	No description
Gene3D	G3DSA:3.30.730.10	3.0E-30	77	133	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-34	77	139	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-21	77	133	IPR016177	DNA-binding domain
Pfam	PF00847	3.1E-14	77	125	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.459	77	133	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	78	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	99	115	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSPPQPNGKP QQPISRRIVR ITVTDADATD SSSDEEAASP KKIQKRPKKK LVNEITIGVS 60 TKENDVMAGS SQSKVKRYRG VRQRPWGRWA AEIRDGRRMR LWLGTFDTAE EAAVAYDQAA 120 VKLRGPNAPT NFKLLDCNAV QS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-20	77	132	14	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	45	PKKIQKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016738466.1	1e-101	PREDICTED: ethylene-responsive transcription factor ERF070-like
Swissprot	Q9C995	5e-36	ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBL	A0A1U8NHG7	2e-99	A0A1U8NHG7_GOSHI; ethylene-responsive transcription factor ERF070-like
TrEMBL	A0A2P5WA87	2e-99	A0A2P5WA87_GOSBA; Uncharacterized protein
STRING	Gorai.009G355700.1	2e-88	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4000	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71130.1	8e-19	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]