PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29124_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 327aa    MW: 36923 Da    PI: 5.715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29124_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19112163156
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                 ++++GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  +++a+ +l+g+
  Cotton_A_29124_BGI-A2_v1.0 112 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYNTAEEAAMVYDKAAIQLRGH 163
                                 59********.**********72....45**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-31112169No hitNo description
Gene3DG3DSA:3.30.730.101.5E-29113170IPR001471AP2/ERF domain
PfamPF008472.3E-12113163IPR001471AP2/ERF domain
SMARTSM003801.9E-36113176IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-21113170IPR016177DNA-binding domain
PROSITE profilePS5103223.261113170IPR001471AP2/ERF domain
PRINTSPR003677.1E-10114125IPR001471AP2/ERF domain
PRINTSPR003677.1E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDPCSVSLIK YTEHRNETKL LSPLVNGRVE NKPEMKPRIV RISVTDADAT DSSSDDEEET  60
RMIRRRSRNR VKKFVNEITI ESTNPTESRC VRKKPAAEKL KVKAAAKVPA GKKFRGVRQR  120
PWGKWAAEIR DPLRRVRLWL GTYNTAEEAA MVYDKAAIQL RGHDALTNFT TPPMKDENIS  180
QKQLSSSDYN SGEESHNSYL CSPTSVLRCP SLSIDEVDSQ SFEKSRETRN RPRDVPDDSC  240
CISGENLSDF SEHSSLFAGD IFSSVPSLFD DHTSLHEGFL KDDFGYGYLS SGGDFEFGFG  300
TFSSWQYVDD HFQDIGDLFG SDPPFAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20111169362ATERF1
3gcc_A2e-20111169362ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609030.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A1U8NUZ10.0A0A1U8NUZ1_GOSHI; ethylene-responsive transcription factor CRF1-like
STRINGGorai.003G082200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.21e-55cytokinin response factor 2