PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29014_BGI-A2_v1.0
Common NameF383_32881
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 91aa    MW: 10330.6 Da    PI: 6.9561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29014_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-0818581554
                                HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                         HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                +i + +++Lr+llP+ + + ++k  s a +Le++++YIk L
  Cotton_A_29014_BGI-A2_v1.0 18 QITQLLSTLRQLLPEiPHSHSHKASSAAKVLEQTCNYIKTL 58
                                79999**********886555555***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.048358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00271364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-91777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-61858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-81874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRWRESS RTNISEEQIT QLLSTLRQLL PEIPHSHSHK ASSAAKVLEQ TCNYIKTLHR  60
EVDDLSDRLS QLLATIDADS AEAAIIRSLF N
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614922.12e-59PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX12e-29PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0B0N4K44e-58A0A0B0N4K4_GOSAR; Transcription factor protein
TrEMBLA0A2P5W7624e-58A0A2P5W762_GOSBA; Uncharacterized protein
TrEMBLA0A2S1FVN64e-58A0A2S1FVN6_GOSHI; BHLH protein
STRINGGorai.012G055200.13e-56(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2842333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.16e-29bHLH family protein