PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28643_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 200aa    MW: 22429.1 Da    PI: 6.7828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28643_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-054163123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y+C+ C++ F++   L  H+++H
  Cotton_A_28643_BGI-A2_v1.0 41 YTCTFCKREFRSAQALGGHMNVH 63
                                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.42E-73867No hitNo description
Gene3DG3DSA:3.30.160.603.8E-43967IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.5E-74065IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1774168IPR007087Zinc finger, C2H2
SMARTSM003550.00414163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MERSDWSTSK MGNWEFNRLD LVELEGEQYS CCKSPWPAKY YTCTFCKREF RSAQALGGHM  60
NVHRKDRARL RLFSSWVLES QNPNKPSSNP NYPNPNPINS SSPSDDFSVY PHHSLLSPLF  120
PTPSSSVLTY GENPKKPLNP QLGDLSQENT MTPFPAGVEN LKVHAPNYKL EVGGVTGLDL  180
ATGFGDTKEV LDLDLRLGHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-113663229superman protein
2l1o_A4e-113663229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5801378e-49JX580137.1 Gossypium hirsutum clone NBRI_GE12506 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646214.11e-148PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1U8P9H91e-146A0A1U8P9H9_GOSHI; transcriptional regulator SUPERMAN-like
TrEMBLA0A2P5WM871e-146A0A2P5WM87_GOSBA; Uncharacterized protein
STRINGGorai.001G251100.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.12e-21zinc finger protein 11