PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28629_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 120aa    MW: 13785.5 Da    PI: 9.6554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28629_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-181464256
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                +y+G+r+++ +g+++Ae+rdps    ++r +lg+f t eeAa+a+++a+ +++g+
  Cotton_A_28629_BGI-A2_v1.0 14 QYRGIRRRP-WGKFAAELRDPSR---NTRLWLGTFKTVEEAARAYDRAAFAFRGH 64
                                69*******.**********854...4*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.41E-221472IPR016177DNA-binding domain
CDDcd000185.02E-311472No hitNo description
PROSITE profilePS5103223.8021471IPR001471AP2/ERF domain
PfamPF008474.2E-131464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-301472IPR001471AP2/ERF domain
SMARTSM003808.3E-361477IPR001471AP2/ERF domain
PRINTSPR003676.1E-111526IPR001471AP2/ERF domain
PRINTSPR003676.1E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
KRKMKNEMEN GGVQYRGIRR RPWGKFAAEL RDPSRNTRLW LGTFKTVEEA ARAYDRAAFA  60
FRGHSAVLNF PNEFQCQNPS FSSSCTSVGR VNPQRGGASE VIEFEYLDNK LLEDLLETQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-261411114114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747858.13e-75PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5X7W92e-75A0A2P5X7W9_GOSBA; Uncharacterized protein
STRINGGorai.001G252700.13e-74(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-31ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]