PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28500_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 356aa    MW: 38861 Da    PI: 4.8079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28500_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16212248135
                        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                 C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Cotton_A_28500_BGI-A2_v1.0 212 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 248
                                 *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.0E-573108IPR010399Tify domain
PROSITE profilePS5132011.80573108IPR010399Tify domain
PfamPF062003.5E-977107IPR010399Tify domain
PfamPF062039.4E-14141183IPR010402CCT domain
PROSITE profilePS5101712.55141183IPR010402CCT domain
PROSITE profilePS501148.88206265IPR000679Zinc finger, GATA-type
SMARTSM004014.3E-11206259IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-11208258No hitNo description
Gene3DG3DSA:3.30.50.105.7E-15210253IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.07E-16211255No hitNo description
PROSITE patternPS003440212239IPR000679Zinc finger, GATA-type
PfamPF003206.9E-14212248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAAANPRPLQ VRPFEEHERG TMQIDDDDGD YEDDAMDDVE DANINSVNVA EHGMGLIGRV  60
IGGGGAAGGG VVRALRTSEL TLSFEGEVYV FPAVTSEKVQ AVLLLLGGRH IPTGVPSIEV  120
PFDQNNMGVA DVSKRSKLSR RIASLVRFRE KRKERCFEKK IRYTVRKEAA QRMHRKNGQF  180
ASVKESNSPS SWDSSHIGFQ DGTRPETAIR SCQHCGVSEN NTPAMRRGPA GPRTLCNACG  240
LMWANKGTLR DLSKGGRNIS LEQSEPETPI EVKPSIVEGD LSANRDENGN PSKDLTNRSN  300
NASVNPDEED LHESAEDLTN SLSMGIVHSA EDDKQEPPVE LTNPSDTEID IPPSFD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636746.10.0PREDICTED: GATA transcription factor 24-like
TrEMBLA0A1U8KHD00.0A0A1U8KHD0_GOSHI; GATA transcription factor 24-like isoform X2
STRINGGorai.002G138300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-59ZIM-like 1