 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cotton_A_28384_BGI-A2_v1.0 |
| Common Name | F383_16162 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 224aa MW: 26057.7 Da PI: 10.1417 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_28384_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.2 | 1.2e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fsstgk++e++s
Cotton_A_28384_BGI-A2_v1.0 9 KRIENATNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSTGKFHEFIS 59
79***********************************************86 PP
|
| 2 | K-box | 95.4 | 9.2e-32 | 71 | 165 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83
yqk++g++l+ +++e++q+++++Lk+ +++L+re+R+++G d+++L++keLq Le ++++sl iR++K++++++q+++ +kk
Cotton_A_28384_BGI-A2_v1.0 71 YQKTTGTDLWISHYEKMQENYRRLKEINKKLRREIRQRMGGDVDDLNIKELQALEAKMDSSLVAIRDRKYHVIKTQTDTHKKK 153
8999******************************************************************************* PP
K-box 84 ekelqeenkaLr 95
++l+e++ +L
Cotton_A_28384_BGI-A2_v1.0 154 VRNLEERHANLV 165
*********996 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 32.941 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 6.0E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 5.62E-37 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 7.50E-40 | 2 | 80 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 8.2E-22 | 82 | 165 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.461 | 84 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MGRGKIEIKR IENATNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS TGKFHEFISP 60
NISTKAFFDL YQKTTGTDLW ISHYEKMQEN YRRLKEINKK LRREIRQRMG GDVDDLNIKE 120
LQALEAKMDS SLVAIRDRKY HVIKTQTDTH KKKVRNLEER HANLVFDLET KLDQQDGIVE 180
SEGYYNEAAN GASNLHALRL YQIHHPNLVL HHGGRFGSND LRLA
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HM006911 | 0.0 | HM006911.1 Gossypium hirsutum transcription factor TM6 (TM6) mRNA, complete cds. |
