PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 794aa MW: 90807.6 Da PI: 6.8471

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_28222_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100	2.5e-31	89	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk +++gkw+v+ ++ Cotton_A_28222_BGI-A2_v1.0 89 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKVQDSGKWVVSGFV 171 9*************************************998888545677889************************ PP FAR1 83 leHnHelap 91 eHnHel+p Cotton_A_28222_BGI-A2_v1.0 172 REHNHELVP 180 *****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-29	89	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-33	302	394	IPR018289	MULE transposase domain
Pfam	PF04434	1.3E-11	570	616	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.14	582	618	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.2E-8	593	620	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MDPEILEFDL GLGGGGSSGR DGDDDANIGL DVDEDMADSP APSSILASNS NGGGFGTGGG 60 EIYLPEGDLL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF 120 VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKVQ DSGKWVVSGF VREHNHELVP 180 PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR 240 NNRQRSLEGD IQLLLDYLRQ MQAENSNFFF AVQGDEDQAL TSNVFWADPK SRMNYTYFGD 300 TVTFDTTYRS NRYRLPFAPF TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRP 360 PVSITTDHDA VIRSAIMQVF PETRHRFCKW HIFKKCQEKL SQVFLKHPTF EADFHKCVNL 420 PESIEEFESC WLSLVDRYEL RDHEWLQMMY NDRRHWIPVY LRDTFFAEMS ITQRSDSMNS 480 YFDGFVNAST NLNQFFKLYE KALESRNEKE VKADYDTMNT SPALKTPSPM EKQASELYTR 540 KLFTRFQEEL VGTLTFMASK SDDDDDVITY QVAKFGEDHK SYYVKFNVLE MKAACSCQMF 600 EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTKNARSSVI LEERSSDVYT NYLESHTVRY 660 NTLRHETFKL VDEGSKSLDT CNVAIDALQQ AAKRLALATK NEGRATLVNG RIRGDSARDA 720 SRANTTNHKM LCQPLSEDDM DKKIRELTNE LDYASRKCEV YRSNLLSVLK DIEDHKLQLS 780 IKVQNIKISM KDGL

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MDPEILEFDL GLGGGGSSGR DGDDDANIGL DVDEDMADSP APSSILASNS NGGGFGTGGG  60
EIYLPEGDLL DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR RDGAIIQRQF  120
VCAKEGFRNL NEKRTKDREI KRPRTITRVG CKASLSVKVQ DSGKWVVSGF VREHNHELVP  180
PDQVHCLRSH RQISGPAKTL IDTLQAAGMG PRRIMSALIK EYGGISKVGF TEVDCRNYMR  240
NNRQRSLEGD IQLLLDYLRQ MQAENSNFFF AVQGDEDQAL TSNVFWADPK SRMNYTYFGD  300
TVTFDTTYRS NRYRLPFAPF TGVNHHGQPV LFGCAFLINE SEASFVWLFK TWLMAMSGRP  360
PVSITTDHDA VIRSAIMQVF PETRHRFCKW HIFKKCQEKL SQVFLKHPTF EADFHKCVNL  420
PESIEEFESC WLSLVDRYEL RDHEWLQMMY NDRRHWIPVY LRDTFFAEMS ITQRSDSMNS  480
YFDGFVNAST NLNQFFKLYE KALESRNEKE VKADYDTMNT SPALKTPSPM EKQASELYTR  540
KLFTRFQEEL VGTLTFMASK SDDDDDVITY QVAKFGEDHK SYYVKFNVLE MKAACSCQMF  600
EFSGLLCRHV LAVFRVTNVL TLPSHYILKR WTKNARSSVI LEERSSDVYT NYLESHTVRY  660
NTLRHETFKL VDEGSKSLDT CNVAIDALQQ AAKRLALATK NEGRATLVNG RIRGDSARDA  720
SRANTTNHKM LCQPLSEDDM DKKIRELTNE LDYASRKCEV YRSNLLSVLK DIEDHKLQLS  780
IKVQNIKISM KDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017620235.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1U8IFR1	0.0	A0A1U8IFR1_GOSHI; protein FAR1-RELATED SEQUENCE 5-like
STRING	Gorai.013G065300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]